Strain Fitness in Pseudomonas sp. DMC3 around GFF2429

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2427 and GFF2428 overlap by 4 nucleotidesGFF2428 and GFF2429 overlap by 4 nucleotidesGFF2429 and GFF2430 are separated by 17 nucleotidesGFF2430 and GFF2431 are separated by 55 nucleotides GFF2427 - hypothetical protein, at 214,552 to 215,778 GFF2427 GFF2428 - dTDP-6-deoxy-L-talose 4-dehydrogenase (NAD(+)), at 215,775 to 216,626 GFF2428 GFF2429 - hypothetical protein, at 216,623 to 217,693 GFF2429 GFF2430 - Rhamnosyl O-methyltransferase, at 217,711 to 218,448 GFF2430 GFF2431 - hypothetical protein, at 218,504 to 221,416 GFF2431 Position (kb) 216 217 218Strain fitness (log2 ratio) -1 0 1 2at 215.665 kb on + strandat 215.665 kb on + strandat 215.666 kb on - strandat 215.666 kb on - strandat 216.016 kb on - strand, within GFF2428at 216.016 kb on - strand, within GFF2428at 216.065 kb on + strand, within GFF2428at 216.080 kb on - strand, within GFF2428at 216.127 kb on - strand, within GFF2428at 216.200 kb on + strand, within GFF2428at 216.200 kb on + strand, within GFF2428at 216.200 kb on + strand, within GFF2428at 216.201 kb on - strand, within GFF2428at 216.201 kb on - strand, within GFF2428at 216.270 kb on + strand, within GFF2428at 216.270 kb on + strand, within GFF2428at 216.271 kb on - strand, within GFF2428at 216.271 kb on - strand, within GFF2428at 216.271 kb on - strand, within GFF2428at 216.608 kb on - strandat 216.638 kb on + strandat 216.789 kb on - strand, within GFF2429at 216.789 kb on - strand, within GFF2429at 216.789 kb on - strand, within GFF2429at 216.800 kb on + strand, within GFF2429at 216.974 kb on + strand, within GFF2429at 216.974 kb on + strand, within GFF2429at 216.975 kb on - strand, within GFF2429at 216.975 kb on - strand, within GFF2429at 217.130 kb on + strand, within GFF2429at 217.130 kb on + strand, within GFF2429at 217.130 kb on + strand, within GFF2429at 217.130 kb on + strand, within GFF2429at 217.190 kb on + strand, within GFF2429at 217.191 kb on - strand, within GFF2429at 217.277 kb on + strand, within GFF2429at 217.277 kb on + strand, within GFF2429at 217.277 kb on + strand, within GFF2429at 217.278 kb on - strand, within GFF2429at 217.278 kb on - strand, within GFF2429at 217.278 kb on - strand, within GFF2429at 217.283 kb on + strand, within GFF2429at 217.283 kb on + strand, within GFF2429at 217.283 kb on + strand, within GFF2429at 217.284 kb on - strand, within GFF2429at 217.284 kb on - strand, within GFF2429at 217.451 kb on + strand, within GFF2429at 217.451 kb on + strand, within GFF2429at 217.452 kb on - strand, within GFF2429at 217.461 kb on - strand, within GFF2429at 217.461 kb on - strand, within GFF2429at 217.461 kb on - strand, within GFF2429at 217.655 kb on + strandat 217.655 kb on + strandat 217.655 kb on + strandat 217.662 kb on - strandat 217.837 kb on + strand, within GFF2430at 217.837 kb on + strand, within GFF2430at 217.838 kb on - strand, within GFF2430at 217.838 kb on - strand, within GFF2430at 217.838 kb on - strand, within GFF2430at 217.838 kb on - strand, within GFF2430at 217.843 kb on + strand, within GFF2430at 217.844 kb on - strand, within GFF2430at 217.844 kb on - strand, within GFF2430at 217.976 kb on - strand, within GFF2430at 217.976 kb on - strand, within GFF2430at 217.976 kb on - strand, within GFF2430at 217.976 kb on - strand, within GFF2430at 217.978 kb on + strand, within GFF2430at 217.978 kb on + strand, within GFF2430at 217.978 kb on + strand, within GFF2430at 217.979 kb on - strand, within GFF2430at 217.979 kb on - strand, within GFF2430at 218.221 kb on + strand, within GFF2430at 218.248 kb on + strand, within GFF2430at 218.248 kb on + strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.249 kb on - strand, within GFF2430at 218.446 kb on + strandat 218.504 kb on - strandat 218.516 kb on + strandat 218.517 kb on - strandat 218.517 kb on - strandat 218.517 kb on - strandat 218.541 kb on + strandat 218.542 kb on - strandat 218.542 kb on - strandat 218.610 kb on - strandat 218.610 kb on - strandat 218.610 kb on - strandat 218.610 kb on - strandat 218.612 kb on + strandat 218.612 kb on + strandat 218.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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215,665 + +0.3
215,665 + +0.1
215,666 - +0.2
215,666 - -0.0
216,016 - GFF2428 0.28 +0.4
216,016 - GFF2428 0.28 -0.1
216,065 + GFF2428 0.34 -0.7
216,080 - GFF2428 0.36 -0.0
216,127 - GFF2428 0.41 +0.2
216,200 + GFF2428 0.50 -0.0
216,200 + GFF2428 0.50 +0.0
216,200 + GFF2428 0.50 +0.1
216,201 - GFF2428 0.50 -0.4
216,201 - GFF2428 0.50 -0.8
216,270 + GFF2428 0.58 +0.3
216,270 + GFF2428 0.58 +0.4
216,271 - GFF2428 0.58 +0.3
216,271 - GFF2428 0.58 +0.6
216,271 - GFF2428 0.58 +1.4
216,608 - +0.3
216,638 + +1.2
216,789 - GFF2429 0.15 +2.0
216,789 - GFF2429 0.15 +0.4
216,789 - GFF2429 0.15 +0.4
216,800 + GFF2429 0.17 -0.2
216,974 + GFF2429 0.33 +0.1
216,974 + GFF2429 0.33 +2.2
216,975 - GFF2429 0.33 +0.7
216,975 - GFF2429 0.33 +0.9
217,130 + GFF2429 0.47 +1.2
217,130 + GFF2429 0.47 -0.2
217,130 + GFF2429 0.47 -0.1
217,130 + GFF2429 0.47 +0.5
217,190 + GFF2429 0.53 +1.6
217,191 - GFF2429 0.53 +0.4
217,277 + GFF2429 0.61 +2.2
217,277 + GFF2429 0.61 -0.9
217,277 + GFF2429 0.61 +0.2
217,278 - GFF2429 0.61 -1.6
217,278 - GFF2429 0.61 +0.5
217,278 - GFF2429 0.61 +0.3
217,283 + GFF2429 0.62 +0.5
217,283 + GFF2429 0.62 -0.8
217,283 + GFF2429 0.62 -0.1
217,284 - GFF2429 0.62 -0.5
217,284 - GFF2429 0.62 +1.7
217,451 + GFF2429 0.77 +0.7
217,451 + GFF2429 0.77 -0.1
217,452 - GFF2429 0.77 +0.3
217,461 - GFF2429 0.78 -0.1
217,461 - GFF2429 0.78 -0.2
217,461 - GFF2429 0.78 +0.6
217,655 + -0.5
217,655 + +0.6
217,655 + -0.7
217,662 - +0.3
217,837 + GFF2430 0.17 -0.4
217,837 + GFF2430 0.17 +1.1
217,838 - GFF2430 0.17 +0.3
217,838 - GFF2430 0.17 +0.6
217,838 - GFF2430 0.17 +0.1
217,838 - GFF2430 0.17 -0.6
217,843 + GFF2430 0.18 -0.0
217,844 - GFF2430 0.18 -1.6
217,844 - GFF2430 0.18 +0.7
217,976 - GFF2430 0.36 +1.0
217,976 - GFF2430 0.36 +0.7
217,976 - GFF2430 0.36 -0.1
217,976 - GFF2430 0.36 -0.0
217,978 + GFF2430 0.36 +0.3
217,978 + GFF2430 0.36 +0.5
217,978 + GFF2430 0.36 +0.4
217,979 - GFF2430 0.36 +1.0
217,979 - GFF2430 0.36 +1.4
218,221 + GFF2430 0.69 +0.3
218,248 + GFF2430 0.73 -0.1
218,248 + GFF2430 0.73 +0.4
218,249 - GFF2430 0.73 -1.3
218,249 - GFF2430 0.73 +0.7
218,249 - GFF2430 0.73 +0.6
218,249 - GFF2430 0.73 +0.1
218,249 - GFF2430 0.73 +1.0
218,446 + -0.3
218,504 - +0.1
218,516 + +1.9
218,517 - +2.1
218,517 - +0.9
218,517 - -0.1
218,541 + -0.4
218,542 - +1.2
218,542 - +0.9
218,610 - +0.8
218,610 - +0.2
218,610 - +1.1
218,610 - +0.0
218,612 + +0.4
218,612 + +0.9
218,691 - -1.6

Or see this region's nucleotide sequence