Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2425 and GFF2426 overlap by 4 nucleotides GFF2426 and GFF2427 overlap by 4 nucleotides GFF2427 and GFF2428 overlap by 4 nucleotides GFF2428 and GFF2429 overlap by 4 nucleotides
GFF2425 - CDP-glucose 4,6-dehydratase, at 212,916 to 213,998
GFF2425
GFF2426 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 213,995 to 214,555
GFF2426
GFF2427 - hypothetical protein, at 214,552 to 215,778
GFF2427
GFF2428 - dTDP-6-deoxy-L-talose 4-dehydrogenase (NAD(+)), at 215,775 to 216,626
GFF2428
GFF2429 - hypothetical protein, at 216,623 to 217,693
GFF2429
Position (kb) 214
215
216 Strain fitness (log2 ratio) -1
0
1
2 at 213.947 kb on + strand at 213.947 kb on + strand at 213.948 kb on - strand at 213.959 kb on - strand at 214.051 kb on + strand, within GFF2426 at 214.190 kb on + strand, within GFF2426 at 214.397 kb on + strand, within GFF2426 at 214.397 kb on + strand, within GFF2426 at 214.398 kb on - strand, within GFF2426 at 214.551 kb on + strand at 214.552 kb on - strand at 214.628 kb on - strand at 214.628 kb on - strand at 214.720 kb on + strand, within GFF2427 at 214.721 kb on - strand, within GFF2427 at 214.759 kb on + strand, within GFF2427 at 214.760 kb on - strand, within GFF2427 at 214.780 kb on - strand, within GFF2427 at 214.880 kb on - strand, within GFF2427 at 214.891 kb on + strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 215.192 kb on - strand, within GFF2427 at 215.203 kb on + strand, within GFF2427 at 215.306 kb on + strand, within GFF2427 at 215.404 kb on + strand, within GFF2427 at 215.405 kb on - strand, within GFF2427 at 215.407 kb on + strand, within GFF2427 at 215.407 kb on + strand, within GFF2427 at 215.408 kb on - strand, within GFF2427 at 215.408 kb on - strand, within GFF2427 at 215.523 kb on + strand, within GFF2427 at 215.523 kb on + strand, within GFF2427 at 215.523 kb on + strand, within GFF2427 at 215.524 kb on - strand, within GFF2427 at 215.524 kb on - strand, within GFF2427 at 215.536 kb on + strand, within GFF2427 at 215.537 kb on - strand, within GFF2427 at 215.665 kb on + strand at 215.665 kb on + strand at 215.666 kb on - strand at 215.666 kb on - strand at 216.016 kb on - strand, within GFF2428 at 216.016 kb on - strand, within GFF2428 at 216.065 kb on + strand, within GFF2428 at 216.080 kb on - strand, within GFF2428 at 216.127 kb on - strand, within GFF2428 at 216.200 kb on + strand, within GFF2428 at 216.200 kb on + strand, within GFF2428 at 216.200 kb on + strand, within GFF2428 at 216.201 kb on - strand, within GFF2428 at 216.201 kb on - strand, within GFF2428 at 216.270 kb on + strand, within GFF2428 at 216.270 kb on + strand, within GFF2428 at 216.271 kb on - strand, within GFF2428 at 216.271 kb on - strand, within GFF2428 at 216.271 kb on - strand, within GFF2428 at 216.608 kb on - strand at 216.638 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 213,947 + +0.8 213,947 + -0.0 213,948 - -0.4 213,959 - -0.2 214,051 + GFF2426 0.10 +1.2 214,190 + GFF2426 0.35 +0.2 214,397 + GFF2426 0.72 -0.5 214,397 + GFF2426 0.72 -0.0 214,398 - GFF2426 0.72 +2.0 214,551 + +1.1 214,552 - +0.9 214,628 - +0.6 214,628 - +0.9 214,720 + GFF2427 0.14 -1.5 214,721 - GFF2427 0.14 +0.5 214,759 + GFF2427 0.17 +0.1 214,760 - GFF2427 0.17 -0.1 214,780 - GFF2427 0.19 +1.5 214,880 - GFF2427 0.27 +1.0 214,891 + GFF2427 0.28 +1.4 214,892 - GFF2427 0.28 +0.3 214,892 - GFF2427 0.28 +0.6 214,892 - GFF2427 0.28 +0.6 214,892 - GFF2427 0.28 -0.6 215,192 - GFF2427 0.52 +1.8 215,203 + GFF2427 0.53 +1.2 215,306 + GFF2427 0.61 +1.7 215,404 + GFF2427 0.69 -0.1 215,405 - GFF2427 0.70 -0.3 215,407 + GFF2427 0.70 +0.3 215,407 + GFF2427 0.70 +0.2 215,408 - GFF2427 0.70 +0.6 215,408 - GFF2427 0.70 +0.7 215,523 + GFF2427 0.79 -0.1 215,523 + GFF2427 0.79 -0.1 215,523 + GFF2427 0.79 +0.2 215,524 - GFF2427 0.79 -0.3 215,524 - GFF2427 0.79 +1.5 215,536 + GFF2427 0.80 +0.7 215,537 - GFF2427 0.80 +1.0 215,665 + +0.3 215,665 + +0.1 215,666 - +0.2 215,666 - -0.0 216,016 - GFF2428 0.28 +0.4 216,016 - GFF2428 0.28 -0.1 216,065 + GFF2428 0.34 -0.7 216,080 - GFF2428 0.36 -0.0 216,127 - GFF2428 0.41 +0.2 216,200 + GFF2428 0.50 -0.0 216,200 + GFF2428 0.50 +0.0 216,200 + GFF2428 0.50 +0.1 216,201 - GFF2428 0.50 -0.4 216,201 - GFF2428 0.50 -0.8 216,270 + GFF2428 0.58 +0.3 216,270 + GFF2428 0.58 +0.4 216,271 - GFF2428 0.58 +0.3 216,271 - GFF2428 0.58 +0.6 216,271 - GFF2428 0.58 +1.4 216,608 - +0.3 216,638 + +1.2
Or see this region's nucleotide sequence