Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2425 and GFF2426 overlap by 4 nucleotides GFF2426 and GFF2427 overlap by 4 nucleotides
GFF2425 - CDP-glucose 4,6-dehydratase, at 212,916 to 213,998
GFF2425
GFF2426 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 213,995 to 214,555
GFF2426
GFF2427 - hypothetical protein, at 214,552 to 215,778
GFF2427
Position (kb) 213
214
215 Strain fitness (log2 ratio) -1
0
1
2 at 213.237 kb on + strand, within GFF2425 at 213.237 kb on + strand, within GFF2425 at 213.238 kb on - strand, within GFF2425 at 213.238 kb on - strand, within GFF2425 at 213.396 kb on + strand, within GFF2425 at 213.397 kb on - strand, within GFF2425 at 213.947 kb on + strand at 213.947 kb on + strand at 213.948 kb on - strand at 213.959 kb on - strand at 214.051 kb on + strand, within GFF2426 at 214.190 kb on + strand, within GFF2426 at 214.397 kb on + strand, within GFF2426 at 214.397 kb on + strand, within GFF2426 at 214.398 kb on - strand, within GFF2426 at 214.551 kb on + strand at 214.552 kb on - strand at 214.628 kb on - strand at 214.628 kb on - strand at 214.720 kb on + strand, within GFF2427 at 214.721 kb on - strand, within GFF2427 at 214.759 kb on + strand, within GFF2427 at 214.760 kb on - strand, within GFF2427 at 214.780 kb on - strand, within GFF2427 at 214.880 kb on - strand, within GFF2427 at 214.891 kb on + strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 215.192 kb on - strand, within GFF2427 at 215.203 kb on + strand, within GFF2427 at 215.306 kb on + strand, within GFF2427 at 215.404 kb on + strand, within GFF2427 at 215.405 kb on - strand, within GFF2427 at 215.407 kb on + strand, within GFF2427 at 215.407 kb on + strand, within GFF2427 at 215.408 kb on - strand, within GFF2427 at 215.408 kb on - strand, within GFF2427 at 215.523 kb on + strand, within GFF2427 at 215.523 kb on + strand, within GFF2427 at 215.523 kb on + strand, within GFF2427 at 215.524 kb on - strand, within GFF2427 at 215.524 kb on - strand, within GFF2427 at 215.536 kb on + strand, within GFF2427 at 215.537 kb on - strand, within GFF2427
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 213,237 + GFF2425 0.30 -0.1 213,237 + GFF2425 0.30 +0.6 213,238 - GFF2425 0.30 +0.6 213,238 - GFF2425 0.30 +0.7 213,396 + GFF2425 0.44 +0.8 213,397 - GFF2425 0.44 -1.4 213,947 + +0.8 213,947 + -0.0 213,948 - -0.4 213,959 - -0.2 214,051 + GFF2426 0.10 +1.2 214,190 + GFF2426 0.35 +0.2 214,397 + GFF2426 0.72 -0.5 214,397 + GFF2426 0.72 -0.0 214,398 - GFF2426 0.72 +2.0 214,551 + +1.1 214,552 - +0.9 214,628 - +0.6 214,628 - +0.9 214,720 + GFF2427 0.14 -1.5 214,721 - GFF2427 0.14 +0.5 214,759 + GFF2427 0.17 +0.1 214,760 - GFF2427 0.17 -0.1 214,780 - GFF2427 0.19 +1.5 214,880 - GFF2427 0.27 +1.0 214,891 + GFF2427 0.28 +1.4 214,892 - GFF2427 0.28 +0.3 214,892 - GFF2427 0.28 +0.6 214,892 - GFF2427 0.28 +0.6 214,892 - GFF2427 0.28 -0.6 215,192 - GFF2427 0.52 +1.8 215,203 + GFF2427 0.53 +1.2 215,306 + GFF2427 0.61 +1.7 215,404 + GFF2427 0.69 -0.1 215,405 - GFF2427 0.70 -0.3 215,407 + GFF2427 0.70 +0.3 215,407 + GFF2427 0.70 +0.2 215,408 - GFF2427 0.70 +0.6 215,408 - GFF2427 0.70 +0.7 215,523 + GFF2427 0.79 -0.1 215,523 + GFF2427 0.79 -0.1 215,523 + GFF2427 0.79 +0.2 215,524 - GFF2427 0.79 -0.3 215,524 - GFF2427 0.79 +1.5 215,536 + GFF2427 0.80 +0.7 215,537 - GFF2427 0.80 +1.0
Or see this region's nucleotide sequence