Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2424 and GFF2425 overlap by 19 nucleotides GFF2425 and GFF2426 overlap by 4 nucleotides GFF2426 and GFF2427 overlap by 4 nucleotides
GFF2424 - Glucose-1-phosphate cytidylyltransferase, at 212,161 to 212,934
GFF2424
GFF2425 - CDP-glucose 4,6-dehydratase, at 212,916 to 213,998
GFF2425
GFF2426 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 213,995 to 214,555
GFF2426
GFF2427 - hypothetical protein, at 214,552 to 215,778
GFF2427
Position (kb) 212
213
214 Strain fitness (log2 ratio) -1
0
1
2 at 211.977 kb on + strand at 211.978 kb on - strand at 212.145 kb on + strand at 212.146 kb on - strand at 212.323 kb on + strand, within GFF2424 at 212.324 kb on - strand, within GFF2424 at 212.324 kb on - strand, within GFF2424 at 212.359 kb on + strand, within GFF2424 at 212.359 kb on + strand, within GFF2424 at 212.359 kb on + strand, within GFF2424 at 212.360 kb on - strand, within GFF2424 at 212.360 kb on - strand, within GFF2424 at 212.360 kb on - strand, within GFF2424 at 212.370 kb on + strand, within GFF2424 at 212.371 kb on - strand, within GFF2424 at 212.371 kb on - strand, within GFF2424 at 212.371 kb on - strand, within GFF2424 at 212.371 kb on - strand, within GFF2424 at 212.371 kb on - strand, within GFF2424 at 212.371 kb on - strand, within GFF2424 at 212.371 kb on - strand, within GFF2424 at 212.371 kb on - strand, within GFF2424 at 212.507 kb on - strand, within GFF2424 at 212.539 kb on + strand, within GFF2424 at 212.539 kb on + strand, within GFF2424 at 212.539 kb on + strand, within GFF2424 at 212.540 kb on - strand, within GFF2424 at 212.540 kb on - strand, within GFF2424 at 212.565 kb on + strand, within GFF2424 at 212.565 kb on + strand, within GFF2424 at 212.565 kb on + strand, within GFF2424 at 212.566 kb on - strand, within GFF2424 at 212.566 kb on - strand, within GFF2424 at 212.566 kb on - strand, within GFF2424 at 212.755 kb on + strand, within GFF2424 at 212.756 kb on - strand, within GFF2424 at 212.756 kb on - strand, within GFF2424 at 212.756 kb on - strand, within GFF2424 at 212.756 kb on - strand, within GFF2424 at 212.756 kb on - strand, within GFF2424 at 213.237 kb on + strand, within GFF2425 at 213.237 kb on + strand, within GFF2425 at 213.238 kb on - strand, within GFF2425 at 213.238 kb on - strand, within GFF2425 at 213.396 kb on + strand, within GFF2425 at 213.397 kb on - strand, within GFF2425 at 213.947 kb on + strand at 213.947 kb on + strand at 213.948 kb on - strand at 213.959 kb on - strand at 214.051 kb on + strand, within GFF2426 at 214.190 kb on + strand, within GFF2426 at 214.397 kb on + strand, within GFF2426 at 214.397 kb on + strand, within GFF2426 at 214.398 kb on - strand, within GFF2426 at 214.551 kb on + strand at 214.552 kb on - strand at 214.628 kb on - strand at 214.628 kb on - strand at 214.720 kb on + strand, within GFF2427 at 214.721 kb on - strand, within GFF2427 at 214.759 kb on + strand, within GFF2427 at 214.760 kb on - strand, within GFF2427 at 214.780 kb on - strand, within GFF2427 at 214.880 kb on - strand, within GFF2427 at 214.891 kb on + strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427 at 214.892 kb on - strand, within GFF2427
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 211,977 + -0.3 211,978 - +0.1 212,145 + +0.1 212,146 - -0.9 212,323 + GFF2424 0.21 -0.0 212,324 - GFF2424 0.21 -0.0 212,324 - GFF2424 0.21 +0.1 212,359 + GFF2424 0.26 +0.4 212,359 + GFF2424 0.26 -0.1 212,359 + GFF2424 0.26 -0.1 212,360 - GFF2424 0.26 -0.1 212,360 - GFF2424 0.26 +0.2 212,360 - GFF2424 0.26 -0.6 212,370 + GFF2424 0.27 +0.5 212,371 - GFF2424 0.27 +0.8 212,371 - GFF2424 0.27 -0.4 212,371 - GFF2424 0.27 -1.3 212,371 - GFF2424 0.27 +0.3 212,371 - GFF2424 0.27 -0.1 212,371 - GFF2424 0.27 +0.5 212,371 - GFF2424 0.27 +0.0 212,371 - GFF2424 0.27 +0.6 212,507 - GFF2424 0.45 +0.3 212,539 + GFF2424 0.49 +1.3 212,539 + GFF2424 0.49 +0.0 212,539 + GFF2424 0.49 -0.4 212,540 - GFF2424 0.49 +0.9 212,540 - GFF2424 0.49 +0.1 212,565 + GFF2424 0.52 +0.7 212,565 + GFF2424 0.52 -0.3 212,565 + GFF2424 0.52 -0.2 212,566 - GFF2424 0.52 -0.2 212,566 - GFF2424 0.52 +0.7 212,566 - GFF2424 0.52 +0.4 212,755 + GFF2424 0.77 +0.4 212,756 - GFF2424 0.77 +0.7 212,756 - GFF2424 0.77 +1.2 212,756 - GFF2424 0.77 -0.1 212,756 - GFF2424 0.77 +2.2 212,756 - GFF2424 0.77 -0.1 213,237 + GFF2425 0.30 -0.1 213,237 + GFF2425 0.30 +0.6 213,238 - GFF2425 0.30 +0.6 213,238 - GFF2425 0.30 +0.7 213,396 + GFF2425 0.44 +0.8 213,397 - GFF2425 0.44 -1.4 213,947 + +0.8 213,947 + -0.0 213,948 - -0.4 213,959 - -0.2 214,051 + GFF2426 0.10 +1.2 214,190 + GFF2426 0.35 +0.2 214,397 + GFF2426 0.72 -0.5 214,397 + GFF2426 0.72 -0.0 214,398 - GFF2426 0.72 +2.0 214,551 + +1.1 214,552 - +0.9 214,628 - +0.6 214,628 - +0.9 214,720 + GFF2427 0.14 -1.5 214,721 - GFF2427 0.14 +0.5 214,759 + GFF2427 0.17 +0.1 214,760 - GFF2427 0.17 -0.1 214,780 - GFF2427 0.19 +1.5 214,880 - GFF2427 0.27 +1.0 214,891 + GFF2427 0.28 +1.4 214,892 - GFF2427 0.28 +0.3 214,892 - GFF2427 0.28 +0.6 214,892 - GFF2427 0.28 +0.6 214,892 - GFF2427 0.28 -0.6
Or see this region's nucleotide sequence