Strain Fitness in Pseudomonas sp. DMC3 around GFF2423

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2422 and GFF2423 are separated by 109 nucleotidesGFF2423 and GFF2424 are separated by 846 nucleotides GFF2422 - hypothetical protein, at 206,043 to 207,611 GFF2422 GFF2423 - hypothetical protein, at 207,721 to 211,314 GFF2423 GFF2424 - Glucose-1-phosphate cytidylyltransferase, at 212,161 to 212,934 GFF2424 Position (kb) 207 208 209 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 206.727 kb on + strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.825 kb on + strand, within GFF2422at 206.826 kb on - strand, within GFF2422at 206.901 kb on - strand, within GFF2422at 206.975 kb on + strand, within GFF2422at 206.976 kb on - strand, within GFF2422at 207.036 kb on + strand, within GFF2422at 207.036 kb on + strand, within GFF2422at 207.036 kb on + strand, within GFF2422at 207.037 kb on - strand, within GFF2422at 207.102 kb on + strand, within GFF2422at 207.811 kb on + strandat 207.811 kb on + strandat 207.812 kb on - strandat 207.812 kb on - strandat 207.812 kb on - strandat 207.812 kb on - strandat 207.910 kb on + strandat 207.910 kb on + strandat 208.015 kb on + strandat 208.016 kb on - strandat 208.016 kb on - strandat 208.016 kb on - strandat 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.510 kb on + strand, within GFF2423at 208.511 kb on - strand, within GFF2423at 208.582 kb on - strand, within GFF2423at 208.642 kb on + strand, within GFF2423at 208.643 kb on - strand, within GFF2423at 208.734 kb on - strand, within GFF2423at 208.734 kb on - strand, within GFF2423at 208.810 kb on + strand, within GFF2423at 208.810 kb on + strand, within GFF2423at 208.810 kb on + strand, within GFF2423at 208.810 kb on + strand, within GFF2423at 208.811 kb on - strand, within GFF2423at 208.811 kb on - strand, within GFF2423at 208.811 kb on - strand, within GFF2423at 208.954 kb on + strand, within GFF2423at 208.954 kb on + strand, within GFF2423at 209.134 kb on + strand, within GFF2423at 209.135 kb on - strand, within GFF2423at 209.710 kb on + strand, within GFF2423at 209.711 kb on - strand, within GFF2423at 209.728 kb on - strand, within GFF2423at 209.728 kb on - strand, within GFF2423at 209.833 kb on + strand, within GFF2423at 209.833 kb on + strand, within GFF2423at 209.833 kb on + strand, within GFF2423at 209.833 kb on + strand, within GFF2423at 209.833 kb on + strand, within GFF2423at 209.833 kb on + strand, within GFF2423at 209.833 kb on + strand, within GFF2423at 209.834 kb on - strand, within GFF2423at 209.834 kb on - strand, within GFF2423at 209.834 kb on - strand, within GFF2423at 209.834 kb on - strand, within GFF2423at 209.917 kb on + strand, within GFF2423at 209.917 kb on + strand, within GFF2423at 209.918 kb on - strand, within GFF2423at 209.919 kb on + strand, within GFF2423at 209.919 kb on + strand, within GFF2423at 209.919 kb on + strand, within GFF2423at 209.919 kb on + strand, within GFF2423at 209.919 kb on + strand, within GFF2423at 209.919 kb on + strand, within GFF2423at 209.919 kb on + strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 209.920 kb on - strand, within GFF2423at 210.079 kb on + strand, within GFF2423at 210.086 kb on + strand, within GFF2423at 210.100 kb on + strand, within GFF2423at 210.101 kb on - strand, within GFF2423at 210.332 kb on + strand, within GFF2423at 210.332 kb on + strand, within GFF2423at 210.332 kb on + strand, within GFF2423at 210.332 kb on + strand, within GFF2423at 210.332 kb on + strand, within GFF2423at 210.333 kb on - strand, within GFF2423at 210.392 kb on + strand, within GFF2423at 210.392 kb on + strand, within GFF2423at 210.393 kb on - strand, within GFF2423at 210.426 kb on + strand, within GFF2423at 210.427 kb on - strand, within GFF2423at 210.427 kb on - strand, within GFF2423at 210.427 kb on - strand, within GFF2423at 210.577 kb on + strand, within GFF2423at 210.577 kb on + strand, within GFF2423at 210.577 kb on + strand, within GFF2423at 210.578 kb on - strand, within GFF2423at 210.578 kb on - strand, within GFF2423at 210.578 kb on - strand, within GFF2423at 210.578 kb on - strand, within GFF2423at 210.902 kb on + strand, within GFF2423at 210.937 kb on + strand, within GFF2423at 210.937 kb on + strand, within GFF2423at 210.937 kb on + strand, within GFF2423at 210.938 kb on - strand, within GFF2423at 210.938 kb on - strand, within GFF2423at 210.999 kb on + strandat 211.120 kb on + strandat 211.120 kb on + strandat 211.129 kb on + strandat 211.216 kb on + strandat 211.258 kb on + strandat 211.258 kb on + strandat 211.258 kb on + strandat 211.259 kb on - strandat 211.259 kb on - strandat 211.259 kb on - strandat 211.320 kb on + strandat 211.320 kb on + strandat 211.320 kb on + strandat 211.321 kb on - strandat 211.322 kb on + strandat 211.322 kb on + strandat 211.323 kb on - strandat 211.325 kb on - strandat 211.400 kb on + strandat 211.400 kb on + strandat 211.400 kb on + strandat 211.400 kb on + strandat 211.400 kb on + strandat 211.400 kb on + strandat 211.401 kb on - strandat 211.859 kb on + strandat 211.859 kb on + strandat 211.977 kb on + strandat 211.978 kb on - strandat 212.145 kb on + strandat 212.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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206,727 + GFF2422 0.44 +1.1
206,728 - GFF2422 0.44 +0.0
206,728 - GFF2422 0.44 +0.4
206,728 - GFF2422 0.44 -0.0
206,728 - GFF2422 0.44 +0.8
206,825 + GFF2422 0.50 -0.6
206,826 - GFF2422 0.50 +0.9
206,901 - GFF2422 0.55 +2.6
206,975 + GFF2422 0.59 +0.9
206,976 - GFF2422 0.59 +0.5
207,036 + GFF2422 0.63 -0.6
207,036 + GFF2422 0.63 +0.0
207,036 + GFF2422 0.63 +1.2
207,037 - GFF2422 0.63 -0.6
207,102 + GFF2422 0.67 +0.5
207,811 + -0.8
207,811 + -0.3
207,812 - +0.4
207,812 - +0.7
207,812 - -0.0
207,812 - -0.6
207,910 + -0.2
207,910 + -0.4
208,015 + +1.5
208,016 - -2.1
208,016 - +1.5
208,016 - +0.1
208,321 + GFF2423 0.17 +1.0
208,321 + GFF2423 0.17 -0.3
208,321 + GFF2423 0.17 +0.5
208,321 + GFF2423 0.17 +0.7
208,321 + GFF2423 0.17 -0.6
208,321 + GFF2423 0.17 +0.5
208,321 + GFF2423 0.17 +0.9
208,322 - GFF2423 0.17 +1.4
208,322 - GFF2423 0.17 +1.4
208,322 - GFF2423 0.17 +1.1
208,322 - GFF2423 0.17 +0.0
208,322 - GFF2423 0.17 +1.0
208,322 - GFF2423 0.17 +0.5
208,322 - GFF2423 0.17 +1.6
208,322 - GFF2423 0.17 +0.8
208,322 - GFF2423 0.17 +0.3
208,322 - GFF2423 0.17 +0.9
208,325 + GFF2423 0.17 +0.4
208,325 + GFF2423 0.17 +0.6
208,325 + GFF2423 0.17 +0.5
208,325 + GFF2423 0.17 +0.0
208,325 + GFF2423 0.17 +0.6
208,325 + GFF2423 0.17 +0.9
208,326 - GFF2423 0.17 +1.3
208,326 - GFF2423 0.17 -0.0
208,326 - GFF2423 0.17 +1.6
208,326 - GFF2423 0.17 +0.4
208,326 - GFF2423 0.17 -0.6
208,510 + GFF2423 0.22 +0.7
208,511 - GFF2423 0.22 -0.2
208,582 - GFF2423 0.24 +0.7
208,642 + GFF2423 0.26 +1.4
208,643 - GFF2423 0.26 -0.0
208,734 - GFF2423 0.28 +0.2
208,734 - GFF2423 0.28 -0.6
208,810 + GFF2423 0.30 +0.5
208,810 + GFF2423 0.30 +0.4
208,810 + GFF2423 0.30 +0.5
208,810 + GFF2423 0.30 +0.3
208,811 - GFF2423 0.30 -0.9
208,811 - GFF2423 0.30 -0.1
208,811 - GFF2423 0.30 +0.2
208,954 + GFF2423 0.34 +0.1
208,954 + GFF2423 0.34 +2.3
209,134 + GFF2423 0.39 +0.8
209,135 - GFF2423 0.39 +1.2
209,710 + GFF2423 0.55 -0.4
209,711 - GFF2423 0.55 +0.9
209,728 - GFF2423 0.56 +0.6
209,728 - GFF2423 0.56 +0.0
209,833 + GFF2423 0.59 +0.3
209,833 + GFF2423 0.59 +0.2
209,833 + GFF2423 0.59 +1.2
209,833 + GFF2423 0.59 +0.7
209,833 + GFF2423 0.59 -0.7
209,833 + GFF2423 0.59 +0.3
209,833 + GFF2423 0.59 +0.9
209,834 - GFF2423 0.59 +1.6
209,834 - GFF2423 0.59 +0.4
209,834 - GFF2423 0.59 -0.2
209,834 - GFF2423 0.59 +0.6
209,917 + GFF2423 0.61 -0.1
209,917 + GFF2423 0.61 +0.0
209,918 - GFF2423 0.61 +1.0
209,919 + GFF2423 0.61 -0.1
209,919 + GFF2423 0.61 +0.7
209,919 + GFF2423 0.61 +1.8
209,919 + GFF2423 0.61 -1.0
209,919 + GFF2423 0.61 +1.1
209,919 + GFF2423 0.61 +1.4
209,919 + GFF2423 0.61 +0.3
209,920 - GFF2423 0.61 +1.4
209,920 - GFF2423 0.61 +0.6
209,920 - GFF2423 0.61 +0.3
209,920 - GFF2423 0.61 -0.7
209,920 - GFF2423 0.61 +0.6
209,920 - GFF2423 0.61 +0.9
209,920 - GFF2423 0.61 -0.9
209,920 - GFF2423 0.61 -0.6
209,920 - GFF2423 0.61 +0.8
209,920 - GFF2423 0.61 +0.9
210,079 + GFF2423 0.66 -0.3
210,086 + GFF2423 0.66 +0.8
210,100 + GFF2423 0.66 +1.5
210,101 - GFF2423 0.66 +0.9
210,332 + GFF2423 0.73 +1.0
210,332 + GFF2423 0.73 -0.3
210,332 + GFF2423 0.73 +1.4
210,332 + GFF2423 0.73 +0.4
210,332 + GFF2423 0.73 +1.4
210,333 - GFF2423 0.73 -0.3
210,392 + GFF2423 0.74 +0.7
210,392 + GFF2423 0.74 +0.5
210,393 - GFF2423 0.74 +2.4
210,426 + GFF2423 0.75 +0.9
210,427 - GFF2423 0.75 +0.0
210,427 - GFF2423 0.75 +0.1
210,427 - GFF2423 0.75 -0.2
210,577 + GFF2423 0.79 +0.4
210,577 + GFF2423 0.79 +1.1
210,577 + GFF2423 0.79 +0.6
210,578 - GFF2423 0.79 +0.7
210,578 - GFF2423 0.79 -0.0
210,578 - GFF2423 0.79 +0.3
210,578 - GFF2423 0.79 +1.0
210,902 + GFF2423 0.89 +0.4
210,937 + GFF2423 0.89 +0.1
210,937 + GFF2423 0.89 +0.5
210,937 + GFF2423 0.89 +0.5
210,938 - GFF2423 0.90 -1.4
210,938 - GFF2423 0.90 +0.3
210,999 + +0.8
211,120 + +0.3
211,120 + -0.8
211,129 + +1.4
211,216 + +0.1
211,258 + +0.6
211,258 + +0.3
211,258 + +0.2
211,259 - -0.2
211,259 - +1.1
211,259 - +0.4
211,320 + +0.3
211,320 + -1.3
211,320 + +1.0
211,321 - +0.6
211,322 + -0.6
211,322 + +0.5
211,323 - +0.4
211,325 - -0.4
211,400 + +0.4
211,400 + +0.5
211,400 + -0.9
211,400 + -3.0
211,400 + -0.3
211,400 + +1.0
211,401 - +1.2
211,859 + -0.2
211,859 + -0.5
211,977 + -0.3
211,978 - +0.1
212,145 + +0.1
212,146 - -0.9

Or see this region's nucleotide sequence