Strain Fitness in Pseudomonas sp. DMC3 around GFF2422

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2421 and GFF2422 are separated by 13 nucleotidesGFF2422 and GFF2423 are separated by 109 nucleotides GFF2421 - hypothetical protein, at 203,984 to 206,029 GFF2421 GFF2422 - hypothetical protein, at 206,043 to 207,611 GFF2422 GFF2423 - hypothetical protein, at 207,721 to 211,314 GFF2423 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 205.071 kb on - strand, within GFF2421at 205.100 kb on + strand, within GFF2421at 205.100 kb on + strand, within GFF2421at 205.343 kb on + strand, within GFF2421at 205.343 kb on + strand, within GFF2421at 205.343 kb on + strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.344 kb on - strand, within GFF2421at 205.379 kb on + strand, within GFF2421at 205.379 kb on + strand, within GFF2421at 205.379 kb on + strand, within GFF2421at 205.379 kb on + strand, within GFF2421at 205.380 kb on - strand, within GFF2421at 205.380 kb on - strand, within GFF2421at 205.380 kb on - strand, within GFF2421at 205.380 kb on - strand, within GFF2421at 205.475 kb on + strand, within GFF2421at 205.475 kb on + strand, within GFF2421at 205.475 kb on + strand, within GFF2421at 205.597 kb on + strand, within GFF2421at 205.597 kb on + strand, within GFF2421at 205.598 kb on - strand, within GFF2421at 205.799 kb on + strand, within GFF2421at 205.799 kb on + strand, within GFF2421at 205.799 kb on + strand, within GFF2421at 205.799 kb on + strand, within GFF2421at 205.800 kb on - strand, within GFF2421at 205.800 kb on - strand, within GFF2421at 205.949 kb on + strandat 205.949 kb on + strandat 205.950 kb on - strandat 205.950 kb on - strandat 205.958 kb on + strandat 205.961 kb on + strandat 205.961 kb on + strandat 205.961 kb on + strandat 205.962 kb on - strandat 205.962 kb on - strandat 205.962 kb on - strandat 205.962 kb on - strandat 205.962 kb on - strandat 205.962 kb on - strandat 206.028 kb on - strandat 206.038 kb on - strandat 206.067 kb on + strandat 206.096 kb on + strandat 206.096 kb on + strandat 206.096 kb on + strandat 206.097 kb on - strandat 206.097 kb on - strandat 206.097 kb on - strandat 206.226 kb on + strand, within GFF2422at 206.226 kb on + strand, within GFF2422at 206.227 kb on - strand, within GFF2422at 206.442 kb on + strand, within GFF2422at 206.442 kb on + strand, within GFF2422at 206.442 kb on + strand, within GFF2422at 206.443 kb on - strand, within GFF2422at 206.443 kb on - strand, within GFF2422at 206.443 kb on - strand, within GFF2422at 206.443 kb on - strand, within GFF2422at 206.508 kb on + strand, within GFF2422at 206.508 kb on + strand, within GFF2422at 206.509 kb on - strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.697 kb on + strand, within GFF2422at 206.698 kb on - strand, within GFF2422at 206.698 kb on - strand, within GFF2422at 206.698 kb on - strand, within GFF2422at 206.727 kb on + strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.728 kb on - strand, within GFF2422at 206.825 kb on + strand, within GFF2422at 206.826 kb on - strand, within GFF2422at 206.901 kb on - strand, within GFF2422at 206.975 kb on + strand, within GFF2422at 206.976 kb on - strand, within GFF2422at 207.036 kb on + strand, within GFF2422at 207.036 kb on + strand, within GFF2422at 207.036 kb on + strand, within GFF2422at 207.037 kb on - strand, within GFF2422at 207.102 kb on + strand, within GFF2422at 207.811 kb on + strandat 207.811 kb on + strandat 207.812 kb on - strandat 207.812 kb on - strandat 207.812 kb on - strandat 207.812 kb on - strandat 207.910 kb on + strandat 207.910 kb on + strandat 208.015 kb on + strandat 208.016 kb on - strandat 208.016 kb on - strandat 208.016 kb on - strandat 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.321 kb on + strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.322 kb on - strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.325 kb on + strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.326 kb on - strand, within GFF2423at 208.510 kb on + strand, within GFF2423at 208.511 kb on - strand, within GFF2423at 208.582 kb on - strand, within GFF2423

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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205,071 - GFF2421 0.53 -0.8
205,100 + GFF2421 0.55 +0.1
205,100 + GFF2421 0.55 +1.0
205,343 + GFF2421 0.66 -0.6
205,343 + GFF2421 0.66 -0.6
205,343 + GFF2421 0.66 +0.2
205,344 - GFF2421 0.66 +2.0
205,344 - GFF2421 0.66 -0.2
205,344 - GFF2421 0.66 +0.4
205,344 - GFF2421 0.66 +1.2
205,344 - GFF2421 0.66 +0.9
205,344 - GFF2421 0.66 +0.9
205,344 - GFF2421 0.66 +1.4
205,344 - GFF2421 0.66 +0.9
205,379 + GFF2421 0.68 +0.8
205,379 + GFF2421 0.68 +0.8
205,379 + GFF2421 0.68 +0.8
205,379 + GFF2421 0.68 +1.4
205,380 - GFF2421 0.68 -0.3
205,380 - GFF2421 0.68 +0.3
205,380 - GFF2421 0.68 +2.0
205,380 - GFF2421 0.68 -0.1
205,475 + GFF2421 0.73 +1.0
205,475 + GFF2421 0.73 +1.4
205,475 + GFF2421 0.73 -0.1
205,597 + GFF2421 0.79 -0.2
205,597 + GFF2421 0.79 +0.2
205,598 - GFF2421 0.79 +0.6
205,799 + GFF2421 0.89 +0.7
205,799 + GFF2421 0.89 +1.2
205,799 + GFF2421 0.89 +0.2
205,799 + GFF2421 0.89 +0.1
205,800 - GFF2421 0.89 +0.7
205,800 - GFF2421 0.89 +1.2
205,949 + +0.2
205,949 + +0.7
205,950 - +0.3
205,950 - +2.9
205,958 + +1.3
205,961 + -0.2
205,961 + +0.4
205,961 + +0.5
205,962 - +0.5
205,962 - +1.1
205,962 - +0.0
205,962 - +0.5
205,962 - +0.7
205,962 - +0.6
206,028 - -1.1
206,038 - +1.1
206,067 + +0.0
206,096 + +0.7
206,096 + +1.3
206,096 + -0.8
206,097 - +0.8
206,097 - -0.1
206,097 - -0.6
206,226 + GFF2422 0.12 +0.8
206,226 + GFF2422 0.12 +0.4
206,227 - GFF2422 0.12 -0.2
206,442 + GFF2422 0.25 +1.5
206,442 + GFF2422 0.25 +1.1
206,442 + GFF2422 0.25 +1.4
206,443 - GFF2422 0.25 +1.1
206,443 - GFF2422 0.25 +0.1
206,443 - GFF2422 0.25 +1.6
206,443 - GFF2422 0.25 +2.2
206,508 + GFF2422 0.30 +0.4
206,508 + GFF2422 0.30 +0.1
206,509 - GFF2422 0.30 +1.1
206,697 + GFF2422 0.42 +0.4
206,697 + GFF2422 0.42 +0.3
206,697 + GFF2422 0.42 +0.6
206,697 + GFF2422 0.42 -0.2
206,697 + GFF2422 0.42 +0.3
206,697 + GFF2422 0.42 -0.7
206,697 + GFF2422 0.42 +0.5
206,697 + GFF2422 0.42 +1.5
206,698 - GFF2422 0.42 -0.3
206,698 - GFF2422 0.42 +1.8
206,698 - GFF2422 0.42 +0.6
206,727 + GFF2422 0.44 +1.1
206,728 - GFF2422 0.44 +0.0
206,728 - GFF2422 0.44 +0.4
206,728 - GFF2422 0.44 -0.0
206,728 - GFF2422 0.44 +0.8
206,825 + GFF2422 0.50 -0.6
206,826 - GFF2422 0.50 +0.9
206,901 - GFF2422 0.55 +2.6
206,975 + GFF2422 0.59 +0.9
206,976 - GFF2422 0.59 +0.5
207,036 + GFF2422 0.63 -0.6
207,036 + GFF2422 0.63 +0.0
207,036 + GFF2422 0.63 +1.2
207,037 - GFF2422 0.63 -0.6
207,102 + GFF2422 0.67 +0.5
207,811 + -0.8
207,811 + -0.3
207,812 - +0.4
207,812 - +0.7
207,812 - -0.0
207,812 - -0.6
207,910 + -0.2
207,910 + -0.4
208,015 + +1.5
208,016 - -2.1
208,016 - +1.5
208,016 - +0.1
208,321 + GFF2423 0.17 +1.0
208,321 + GFF2423 0.17 -0.3
208,321 + GFF2423 0.17 +0.5
208,321 + GFF2423 0.17 +0.7
208,321 + GFF2423 0.17 -0.6
208,321 + GFF2423 0.17 +0.5
208,321 + GFF2423 0.17 +0.9
208,322 - GFF2423 0.17 +1.4
208,322 - GFF2423 0.17 +1.4
208,322 - GFF2423 0.17 +1.1
208,322 - GFF2423 0.17 +0.0
208,322 - GFF2423 0.17 +1.0
208,322 - GFF2423 0.17 +0.5
208,322 - GFF2423 0.17 +1.6
208,322 - GFF2423 0.17 +0.8
208,322 - GFF2423 0.17 +0.3
208,322 - GFF2423 0.17 +0.9
208,325 + GFF2423 0.17 +0.4
208,325 + GFF2423 0.17 +0.6
208,325 + GFF2423 0.17 +0.5
208,325 + GFF2423 0.17 +0.0
208,325 + GFF2423 0.17 +0.6
208,325 + GFF2423 0.17 +0.9
208,326 - GFF2423 0.17 +1.3
208,326 - GFF2423 0.17 -0.0
208,326 - GFF2423 0.17 +1.6
208,326 - GFF2423 0.17 +0.4
208,326 - GFF2423 0.17 -0.6
208,510 + GFF2423 0.22 +0.7
208,511 - GFF2423 0.22 -0.2
208,582 - GFF2423 0.24 +0.7

Or see this region's nucleotide sequence