Strain Fitness in Pseudomonas sp. DMC3 around GFF2420

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2419 and GFF2420 are separated by 11 nucleotidesGFF2420 and GFF2421 are separated by 25 nucleotides GFF2419 - Flagellar P-ring protein, at 201,524 to 202,630 GFF2419 GFF2420 - hypothetical protein, at 202,642 to 203,958 GFF2420 GFF2421 - hypothetical protein, at 203,984 to 206,029 GFF2421 Position (kb) 202 203 204Strain fitness (log2 ratio) -2 -1 0 1at 201.665 kb on - strand, within GFF2419at 201.865 kb on + strand, within GFF2419at 201.865 kb on + strand, within GFF2419at 201.932 kb on + strand, within GFF2419at 202.238 kb on + strand, within GFF2419at 202.238 kb on + strand, within GFF2419at 202.446 kb on + strand, within GFF2419at 202.647 kb on + strandat 202.871 kb on - strand, within GFF2420at 202.883 kb on - strand, within GFF2420at 202.883 kb on - strand, within GFF2420at 203.154 kb on + strand, within GFF2420at 203.347 kb on + strand, within GFF2420at 203.348 kb on - strand, within GFF2420at 203.348 kb on - strand, within GFF2420at 203.410 kb on + strand, within GFF2420at 203.728 kb on + strand, within GFF2420at 203.728 kb on + strand, within GFF2420at 203.728 kb on + strand, within GFF2420at 203.729 kb on - strand, within GFF2420at 203.729 kb on - strand, within GFF2420at 203.738 kb on - strand, within GFF2420at 203.738 kb on - strand, within GFF2420at 203.738 kb on - strand, within GFF2420at 203.832 kb on - strandat 203.923 kb on + strandat 203.924 kb on - strandat 203.954 kb on + strandat 203.954 kb on + strandat 203.956 kb on + strandat 203.956 kb on + strandat 203.956 kb on + strandat 203.957 kb on - strandat 203.968 kb on + strandat 203.968 kb on + strandat 203.969 kb on - strandat 203.971 kb on + strandat 203.971 kb on + strandat 203.971 kb on + strandat 203.972 kb on - strandat 203.972 kb on - strandat 203.972 kb on - strandat 204.188 kb on + strandat 204.653 kb on + strand, within GFF2421at 204.653 kb on + strand, within GFF2421at 204.654 kb on - strand, within GFF2421at 204.778 kb on + strand, within GFF2421at 204.778 kb on + strand, within GFF2421at 204.778 kb on + strand, within GFF2421at 204.778 kb on + strand, within GFF2421

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
201,665 - GFF2419 0.13 +0.9
201,865 + GFF2419 0.31 +1.6
201,865 + GFF2419 0.31 +1.0
201,932 + GFF2419 0.37 +1.7
202,238 + GFF2419 0.64 +0.5
202,238 + GFF2419 0.64 +0.6
202,446 + GFF2419 0.83 -1.0
202,647 + +0.3
202,871 - GFF2420 0.17 +1.1
202,883 - GFF2420 0.18 +0.6
202,883 - GFF2420 0.18 +0.5
203,154 + GFF2420 0.39 +1.6
203,347 + GFF2420 0.54 +0.4
203,348 - GFF2420 0.54 +1.5
203,348 - GFF2420 0.54 +1.2
203,410 + GFF2420 0.58 -2.1
203,728 + GFF2420 0.82 -0.1
203,728 + GFF2420 0.82 +1.2
203,728 + GFF2420 0.82 +0.3
203,729 - GFF2420 0.83 +0.5
203,729 - GFF2420 0.83 +0.3
203,738 - GFF2420 0.83 +0.7
203,738 - GFF2420 0.83 -0.3
203,738 - GFF2420 0.83 +0.5
203,832 - +0.4
203,923 + +0.8
203,924 - +0.9
203,954 + +0.1
203,954 + -0.1
203,956 + -0.4
203,956 + -0.6
203,956 + +0.3
203,957 - +0.4
203,968 + -0.7
203,968 + -0.2
203,969 - +1.6
203,971 + -0.9
203,971 + -1.5
203,971 + +0.1
203,972 - +1.0
203,972 - +0.7
203,972 - +0.1
204,188 + +0.1
204,653 + GFF2421 0.33 +0.6
204,653 + GFF2421 0.33 +0.8
204,654 - GFF2421 0.33 +0.3
204,778 + GFF2421 0.39 +0.0
204,778 + GFF2421 0.39 +1.0
204,778 + GFF2421 0.39 +0.5
204,778 + GFF2421 0.39 +0.6

Or see this region's nucleotide sequence