Strain Fitness in Pseudomonas sp. DMC3 around GFF2413

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2412 and GFF2413 overlap by 1 nucleotidesGFF2413 and GFF2414 are separated by 115 nucleotides GFF2412 - Aspartate aminotransferase, at 194,438 to 195,631 GFF2412 GFF2413 - Putative pterin-4-alpha-carbinolamine dehydratase, at 195,631 to 195,987 GFF2413 GFF2414 - Phenylalanine-4-hydroxylase, at 196,103 to 196,894 GFF2414 Position (kb) 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 195.183 kb on + strand, within GFF2412at 195.184 kb on - strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.435 kb on + strand, within GFF2412at 195.436 kb on - strand, within GFF2412at 195.436 kb on - strand, within GFF2412at 195.436 kb on - strand, within GFF2412at 195.436 kb on - strand, within GFF2412at 195.442 kb on + strand, within GFF2412at 195.442 kb on + strand, within GFF2412at 195.442 kb on + strand, within GFF2412at 195.443 kb on - strand, within GFF2412at 195.443 kb on - strand, within GFF2412at 195.522 kb on + strandat 195.522 kb on + strandat 195.523 kb on - strandat 195.523 kb on - strandat 195.523 kb on - strandat 195.632 kb on + strandat 195.632 kb on + strandat 195.632 kb on + strandat 195.632 kb on + strandat 195.633 kb on - strandat 195.633 kb on - strandat 195.633 kb on - strandat 195.633 kb on - strandat 195.633 kb on - strandat 195.874 kb on + strand, within GFF2413at 195.874 kb on + strand, within GFF2413at 195.875 kb on - strand, within GFF2413at 195.992 kb on + strandat 195.992 kb on + strandat 195.993 kb on - strandat 195.993 kb on - strandat 196.017 kb on + strandat 196.020 kb on + strandat 196.051 kb on + strandat 196.230 kb on + strand, within GFF2414at 196.230 kb on + strand, within GFF2414at 196.231 kb on - strand, within GFF2414at 196.320 kb on + strand, within GFF2414at 196.321 kb on - strand, within GFF2414at 196.360 kb on - strand, within GFF2414at 196.360 kb on - strand, within GFF2414at 196.413 kb on + strand, within GFF2414at 196.428 kb on + strand, within GFF2414at 196.429 kb on - strand, within GFF2414at 196.471 kb on - strand, within GFF2414at 196.471 kb on - strand, within GFF2414at 196.494 kb on + strand, within GFF2414at 196.557 kb on + strand, within GFF2414at 196.557 kb on + strand, within GFF2414at 196.558 kb on - strand, within GFF2414at 196.558 kb on - strand, within GFF2414at 196.558 kb on - strand, within GFF2414at 196.694 kb on - strand, within GFF2414at 196.758 kb on + strand, within GFF2414at 196.759 kb on - strand, within GFF2414at 196.759 kb on - strand, within GFF2414at 196.840 kb on - strandat 196.878 kb on + strandat 196.878 kb on + strandat 196.878 kb on + strandat 196.878 kb on + strandat 196.878 kb on + strandat 196.879 kb on - strandat 196.879 kb on - strandat 196.879 kb on - strandat 196.879 kb on - strandat 196.879 kb on - strandat 196.926 kb on + strandat 196.926 kb on + strandat 196.926 kb on + strandat 196.927 kb on - strandat 196.927 kb on - strandat 196.942 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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195,183 + GFF2412 0.62 +0.4
195,184 - GFF2412 0.62 -2.1
195,435 + GFF2412 0.84 -0.1
195,435 + GFF2412 0.84 -1.0
195,435 + GFF2412 0.84 +0.0
195,435 + GFF2412 0.84 +0.1
195,435 + GFF2412 0.84 +0.3
195,435 + GFF2412 0.84 -0.6
195,435 + GFF2412 0.84 -0.6
195,435 + GFF2412 0.84 -0.8
195,435 + GFF2412 0.84 +0.2
195,435 + GFF2412 0.84 +0.0
195,435 + GFF2412 0.84 -0.3
195,436 - GFF2412 0.84 -0.4
195,436 - GFF2412 0.84 -0.5
195,436 - GFF2412 0.84 +0.7
195,436 - GFF2412 0.84 +0.9
195,442 + GFF2412 0.84 -0.2
195,442 + GFF2412 0.84 +0.2
195,442 + GFF2412 0.84 +1.0
195,443 - GFF2412 0.84 -0.7
195,443 - GFF2412 0.84 -1.1
195,522 + +0.4
195,522 + +0.1
195,523 - -0.2
195,523 - +0.8
195,523 - -1.3
195,632 + +0.8
195,632 + -0.6
195,632 + -0.7
195,632 + -0.2
195,633 - -0.3
195,633 - +0.4
195,633 - -0.4
195,633 - -1.0
195,633 - +0.4
195,874 + GFF2413 0.68 -0.5
195,874 + GFF2413 0.68 +1.8
195,875 - GFF2413 0.68 -0.3
195,992 + +0.1
195,992 + +2.0
195,993 - -0.4
195,993 - +0.4
196,017 + -0.5
196,020 + -0.4
196,051 + -0.3
196,230 + GFF2414 0.16 -0.7
196,230 + GFF2414 0.16 -0.2
196,231 - GFF2414 0.16 -0.7
196,320 + GFF2414 0.27 +0.1
196,321 - GFF2414 0.28 -0.2
196,360 - GFF2414 0.32 -1.3
196,360 - GFF2414 0.32 +1.7
196,413 + GFF2414 0.39 -0.3
196,428 + GFF2414 0.41 -0.6
196,429 - GFF2414 0.41 +0.5
196,471 - GFF2414 0.46 -1.1
196,471 - GFF2414 0.46 +0.7
196,494 + GFF2414 0.49 -0.5
196,557 + GFF2414 0.57 +0.2
196,557 + GFF2414 0.57 -0.5
196,558 - GFF2414 0.57 +0.2
196,558 - GFF2414 0.57 +0.2
196,558 - GFF2414 0.57 -0.1
196,694 - GFF2414 0.75 +0.5
196,758 + GFF2414 0.83 -0.2
196,759 - GFF2414 0.83 +0.1
196,759 - GFF2414 0.83 +1.4
196,840 - -0.7
196,878 + -1.1
196,878 + -0.9
196,878 + +0.4
196,878 + -0.3
196,878 + +0.0
196,879 - -0.7
196,879 - +0.7
196,879 - +0.2
196,879 - -1.9
196,879 - -0.9
196,926 + -0.9
196,926 + -0.7
196,926 + -0.1
196,927 - +0.9
196,927 - +1.1
196,942 + -0.9

Or see this region's nucleotide sequence