Strain Fitness in Pseudomonas sp. DMC3 around GFF2348

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2347 and GFF2348 are separated by 88 nucleotidesGFF2348 and GFF2349 are separated by 3 nucleotidesGFF2349 and GFF2350 are separated by 14 nucleotides GFF2347 - Putative multidrug export ATP-binding/permease protein, at 123,675 to 125,507 GFF2347 GFF2348 - Peptidyl-prolyl cis-trans isomerase A, at 125,596 to 126,159 GFF2348 GFF2349 - 3-oxoadipate enol-lactonase 2, at 126,163 to 126,966 GFF2349 GFF2350 - HTH-type transcriptional regulator YhaJ, at 126,981 to 127,904 GFF2350 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 124.686 kb on - strand, within GFF2347at 124.686 kb on - strand, within GFF2347at 124.768 kb on + strand, within GFF2347at 124.768 kb on + strand, within GFF2347at 124.769 kb on - strand, within GFF2347at 124.822 kb on + strand, within GFF2347at 124.822 kb on + strand, within GFF2347at 124.823 kb on - strand, within GFF2347at 124.903 kb on + strand, within GFF2347at 124.904 kb on - strand, within GFF2347at 124.906 kb on + strand, within GFF2347at 124.907 kb on - strand, within GFF2347at 124.921 kb on + strand, within GFF2347at 125.000 kb on - strand, within GFF2347at 125.000 kb on - strand, within GFF2347at 125.000 kb on - strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.134 kb on + strand, within GFF2347at 125.135 kb on - strand, within GFF2347at 125.135 kb on - strand, within GFF2347at 125.135 kb on - strand, within GFF2347at 125.135 kb on - strand, within GFF2347at 125.135 kb on - strand, within GFF2347at 125.135 kb on - strand, within GFF2347at 125.135 kb on - strand, within GFF2347at 125.135 kb on - strand, within GFF2347at 125.329 kb on + strandat 125.329 kb on + strandat 125.343 kb on + strandat 125.343 kb on + strandat 125.413 kb on + strandat 125.414 kb on - strandat 125.414 kb on - strandat 125.417 kb on - strandat 125.417 kb on - strandat 125.417 kb on - strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.422 kb on + strandat 125.423 kb on - strandat 125.423 kb on - strandat 125.423 kb on - strandat 125.423 kb on - strandat 125.423 kb on - strandat 125.423 kb on - strandat 125.423 kb on - strandat 125.423 kb on - strandat 125.423 kb on - strandat 125.540 kb on + strandat 125.541 kb on - strandat 125.541 kb on - strandat 125.972 kb on + strand, within GFF2348at 125.972 kb on + strand, within GFF2348at 125.973 kb on - strand, within GFF2348at 125.990 kb on + strand, within GFF2348at 125.990 kb on + strand, within GFF2348at 125.991 kb on - strand, within GFF2348at 125.991 kb on - strand, within GFF2348at 125.991 kb on - strand, within GFF2348at 125.991 kb on - strand, within GFF2348at 126.124 kb on + strandat 126.298 kb on + strand, within GFF2349at 126.298 kb on + strand, within GFF2349at 126.298 kb on + strand, within GFF2349at 126.299 kb on - strand, within GFF2349at 126.299 kb on - strand, within GFF2349at 126.299 kb on - strand, within GFF2349at 126.302 kb on + strand, within GFF2349at 126.302 kb on + strand, within GFF2349at 126.302 kb on + strand, within GFF2349at 126.302 kb on + strand, within GFF2349at 126.303 kb on - strand, within GFF2349at 126.314 kb on - strand, within GFF2349at 126.329 kb on + strand, within GFF2349at 126.329 kb on + strand, within GFF2349at 126.329 kb on + strand, within GFF2349at 126.330 kb on - strand, within GFF2349at 126.330 kb on - strand, within GFF2349at 126.330 kb on - strand, within GFF2349at 126.616 kb on - strand, within GFF2349at 126.701 kb on + strand, within GFF2349at 126.701 kb on + strand, within GFF2349at 126.701 kb on + strand, within GFF2349at 126.701 kb on + strand, within GFF2349at 126.702 kb on - strand, within GFF2349at 126.702 kb on - strand, within GFF2349at 126.702 kb on - strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.770 kb on + strand, within GFF2349at 126.771 kb on - strand, within GFF2349at 126.920 kb on + strandat 126.920 kb on + strandat 126.959 kb on + strandat 126.959 kb on + strandat 126.959 kb on + strandat 126.960 kb on - strandat 126.960 kb on - strandat 127.099 kb on + strand, within GFF2350at 127.100 kb on - strand, within GFF2350

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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124,686 - GFF2347 0.55 -0.4
124,686 - GFF2347 0.55 +1.7
124,768 + GFF2347 0.60 -0.6
124,768 + GFF2347 0.60 +1.1
124,769 - GFF2347 0.60 +0.1
124,822 + GFF2347 0.63 -1.8
124,822 + GFF2347 0.63 -0.3
124,823 - GFF2347 0.63 -0.8
124,903 + GFF2347 0.67 -0.9
124,904 - GFF2347 0.67 -1.4
124,906 + GFF2347 0.67 +0.1
124,907 - GFF2347 0.67 -0.4
124,921 + GFF2347 0.68 -0.4
125,000 - GFF2347 0.72 -0.1
125,000 - GFF2347 0.72 -0.6
125,000 - GFF2347 0.72 -0.6
125,134 + GFF2347 0.80 -0.3
125,134 + GFF2347 0.80 -0.2
125,134 + GFF2347 0.80 -1.0
125,134 + GFF2347 0.80 -0.3
125,134 + GFF2347 0.80 -2.2
125,134 + GFF2347 0.80 +0.5
125,134 + GFF2347 0.80 +0.5
125,134 + GFF2347 0.80 -0.2
125,134 + GFF2347 0.80 +0.2
125,134 + GFF2347 0.80 +0.8
125,135 - GFF2347 0.80 +1.2
125,135 - GFF2347 0.80 -0.8
125,135 - GFF2347 0.80 -0.9
125,135 - GFF2347 0.80 -0.1
125,135 - GFF2347 0.80 -0.4
125,135 - GFF2347 0.80 +0.0
125,135 - GFF2347 0.80 +1.3
125,135 - GFF2347 0.80 +0.5
125,329 + -0.5
125,329 + +0.0
125,343 + -1.2
125,343 + +0.2
125,413 + +0.0
125,414 - -0.5
125,414 - -1.4
125,417 - -1.3
125,417 - -0.4
125,417 - +0.0
125,422 + -1.0
125,422 + -1.0
125,422 + +0.2
125,422 + +0.0
125,422 + -0.2
125,422 + -0.4
125,422 + -1.4
125,422 + +0.2
125,422 + -1.1
125,422 + -0.8
125,422 + +1.7
125,422 + -0.8
125,422 + -1.0
125,423 - +0.6
125,423 - -0.6
125,423 - -1.5
125,423 - +1.2
125,423 - +0.1
125,423 - -0.0
125,423 - +0.2
125,423 - +0.8
125,423 - +0.6
125,540 + +0.1
125,541 - -0.3
125,541 - -0.6
125,972 + GFF2348 0.67 +0.7
125,972 + GFF2348 0.67 +0.9
125,973 - GFF2348 0.67 -0.2
125,990 + GFF2348 0.70 +1.9
125,990 + GFF2348 0.70 -1.2
125,991 - GFF2348 0.70 -0.4
125,991 - GFF2348 0.70 -1.5
125,991 - GFF2348 0.70 +0.8
125,991 - GFF2348 0.70 +1.5
126,124 + +0.2
126,298 + GFF2349 0.17 -0.3
126,298 + GFF2349 0.17 +0.2
126,298 + GFF2349 0.17 -0.8
126,299 - GFF2349 0.17 +0.2
126,299 - GFF2349 0.17 -0.5
126,299 - GFF2349 0.17 -1.8
126,302 + GFF2349 0.17 +0.8
126,302 + GFF2349 0.17 -1.7
126,302 + GFF2349 0.17 +0.2
126,302 + GFF2349 0.17 +1.0
126,303 - GFF2349 0.17 +0.0
126,314 - GFF2349 0.19 +0.3
126,329 + GFF2349 0.21 +0.0
126,329 + GFF2349 0.21 -0.4
126,329 + GFF2349 0.21 -1.0
126,330 - GFF2349 0.21 +0.1
126,330 - GFF2349 0.21 +1.1
126,330 - GFF2349 0.21 +0.2
126,616 - GFF2349 0.56 +0.1
126,701 + GFF2349 0.67 +0.2
126,701 + GFF2349 0.67 -0.2
126,701 + GFF2349 0.67 -0.6
126,701 + GFF2349 0.67 +0.5
126,702 - GFF2349 0.67 +0.5
126,702 - GFF2349 0.67 -1.0
126,702 - GFF2349 0.67 -0.3
126,770 + GFF2349 0.75 +0.2
126,770 + GFF2349 0.75 -1.4
126,770 + GFF2349 0.75 -0.5
126,770 + GFF2349 0.75 -0.3
126,770 + GFF2349 0.75 -1.6
126,771 - GFF2349 0.76 -0.2
126,920 + -1.3
126,920 + +0.2
126,959 + -0.2
126,959 + -0.8
126,959 + +0.7
126,960 - -0.8
126,960 - -0.9
127,099 + GFF2350 0.13 +0.2
127,100 - GFF2350 0.13 +0.1

Or see this region's nucleotide sequence