Strain Fitness in Pseudomonas sp. DMC3 around GFF2343

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2342 and GFF2343 are separated by 135 nucleotidesGFF2343 and GFF2344 overlap by 7 nucleotidesGFF2344 and GFF2345 are separated by 143 nucleotides GFF2342 - Beta-ketodecanoyl-[acyl-carrier-protein] synthase, at 118,658 to 119,779 GFF2342 GFF2343 - ECF RNA polymerase sigma-E factor, at 119,915 to 120,526 GFF2343 GFF2344 - hypothetical protein, at 120,520 to 120,756 GFF2344 GFF2345 - hypothetical protein, at 120,900 to 122,222 GFF2345 Position (kb) 119 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 119.643 kb on - strand, within GFF2342at 119.643 kb on - strand, within GFF2342at 119.643 kb on - strand, within GFF2342at 119.687 kb on + strandat 119.687 kb on + strandat 119.687 kb on + strandat 119.687 kb on + strandat 119.780 kb on + strandat 119.780 kb on + strandat 119.780 kb on + strandat 119.781 kb on - strandat 119.781 kb on - strandat 119.782 kb on + strandat 119.782 kb on + strandat 119.782 kb on + strandat 119.782 kb on + strandat 119.782 kb on + strandat 119.782 kb on + strandat 119.782 kb on + strandat 119.782 kb on + strandat 119.783 kb on - strandat 119.783 kb on - strandat 119.783 kb on - strandat 119.783 kb on - strandat 119.783 kb on - strandat 119.783 kb on - strandat 119.783 kb on - strandat 119.818 kb on - strandat 119.993 kb on + strand, within GFF2343at 119.993 kb on + strand, within GFF2343at 119.994 kb on - strand, within GFF2343at 119.994 kb on - strand, within GFF2343at 119.994 kb on - strand, within GFF2343at 120.119 kb on - strand, within GFF2343at 120.164 kb on + strand, within GFF2343at 120.415 kb on + strand, within GFF2343at 120.415 kb on + strand, within GFF2343at 120.421 kb on + strand, within GFF2343at 120.422 kb on - strand, within GFF2343at 120.890 kb on - strandat 120.890 kb on - strandat 120.988 kb on + strandat 120.988 kb on + strandat 120.988 kb on + strandat 121.123 kb on + strand, within GFF2345at 121.124 kb on - strand, within GFF2345at 121.129 kb on + strand, within GFF2345at 121.129 kb on + strand, within GFF2345at 121.129 kb on + strand, within GFF2345at 121.130 kb on - strand, within GFF2345at 121.130 kb on - strand, within GFF2345at 121.130 kb on - strand, within GFF2345at 121.130 kb on - strand, within GFF2345at 121.226 kb on - strand, within GFF2345at 121.280 kb on - strand, within GFF2345at 121.280 kb on - strand, within GFF2345at 121.373 kb on - strand, within GFF2345at 121.373 kb on - strand, within GFF2345at 121.378 kb on + strand, within GFF2345at 121.378 kb on + strand, within GFF2345at 121.379 kb on - strand, within GFF2345at 121.507 kb on + strand, within GFF2345at 121.508 kb on - strand, within GFF2345at 121.508 kb on - strand, within GFF2345at 121.508 kb on - strand, within GFF2345at 121.508 kb on - strand, within GFF2345

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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119,643 - GFF2342 0.88 -1.0
119,643 - GFF2342 0.88 -0.3
119,643 - GFF2342 0.88 -0.7
119,687 + -0.8
119,687 + -0.8
119,687 + -0.3
119,687 + +0.6
119,780 + -2.2
119,780 + +0.8
119,780 + -0.6
119,781 - +0.4
119,781 - -0.4
119,782 + -0.0
119,782 + +0.5
119,782 + -0.5
119,782 + +0.2
119,782 + -0.1
119,782 + +0.2
119,782 + +0.1
119,782 + +0.1
119,783 - -0.7
119,783 - +0.7
119,783 - -1.0
119,783 - +0.3
119,783 - -0.6
119,783 - +0.4
119,783 - +0.3
119,818 - -0.6
119,993 + GFF2343 0.13 +0.0
119,993 + GFF2343 0.13 +1.8
119,994 - GFF2343 0.13 +0.8
119,994 - GFF2343 0.13 -0.8
119,994 - GFF2343 0.13 +0.2
120,119 - GFF2343 0.33 +0.2
120,164 + GFF2343 0.41 +0.6
120,415 + GFF2343 0.82 +1.1
120,415 + GFF2343 0.82 -0.9
120,421 + GFF2343 0.83 +2.0
120,422 - GFF2343 0.83 +0.1
120,890 - -1.2
120,890 - -2.0
120,988 + -0.1
120,988 + -0.4
120,988 + -0.2
121,123 + GFF2345 0.17 +0.2
121,124 - GFF2345 0.17 -0.3
121,129 + GFF2345 0.17 -0.2
121,129 + GFF2345 0.17 +0.3
121,129 + GFF2345 0.17 +0.4
121,130 - GFF2345 0.17 -1.6
121,130 - GFF2345 0.17 +0.2
121,130 - GFF2345 0.17 -1.4
121,130 - GFF2345 0.17 +0.9
121,226 - GFF2345 0.25 -0.6
121,280 - GFF2345 0.29 +0.8
121,280 - GFF2345 0.29 -1.6
121,373 - GFF2345 0.36 -0.4
121,373 - GFF2345 0.36 +0.3
121,378 + GFF2345 0.36 -0.8
121,378 + GFF2345 0.36 +0.3
121,379 - GFF2345 0.36 +0.2
121,507 + GFF2345 0.46 +0.1
121,508 - GFF2345 0.46 -1.0
121,508 - GFF2345 0.46 -0.5
121,508 - GFF2345 0.46 +0.2
121,508 - GFF2345 0.46 -0.2

Or see this region's nucleotide sequence