Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2280 and GFF2281 are separated by 80 nucleotides GFF2281 and GFF2282 are separated by 98 nucleotides GFF2282 and GFF2283 are separated by 31 nucleotides
GFF2280 - Periplasmic serine endoprotease DegP, at 58,631 to 60,064
GFF2280
GFF2281 - Beta-barrel assembly-enhancing protease, at 60,145 to 61,578
GFF2281
GFF2282 - Sulfur carrier protein TusA, at 61,677 to 61,916
GFF2282
GFF2283 - hypothetical protein, at 61,948 to 63,018
GFF2283
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.243 kb on + strand, within GFF2280 at 59.244 kb on - strand, within GFF2280 at 59.244 kb on - strand, within GFF2280 at 59.345 kb on + strand, within GFF2280 at 59.346 kb on - strand, within GFF2280 at 59.840 kb on + strand, within GFF2280 at 59.841 kb on - strand, within GFF2280 at 60.062 kb on + strand at 60.062 kb on + strand at 60.168 kb on + strand at 60.168 kb on + strand at 60.169 kb on - strand at 60.169 kb on - strand at 60.479 kb on + strand, within GFF2281 at 60.479 kb on + strand, within GFF2281 at 60.480 kb on - strand, within GFF2281 at 60.498 kb on + strand, within GFF2281 at 60.499 kb on - strand, within GFF2281 at 60.499 kb on - strand, within GFF2281 at 60.575 kb on + strand, within GFF2281 at 60.575 kb on + strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.576 kb on - strand, within GFF2281 at 60.749 kb on + strand, within GFF2281 at 61.218 kb on - strand, within GFF2281 at 61.218 kb on - strand, within GFF2281 at 61.364 kb on + strand, within GFF2281 at 61.364 kb on + strand, within GFF2281 at 61.364 kb on + strand, within GFF2281 at 61.365 kb on - strand, within GFF2281 at 61.365 kb on - strand, within GFF2281 at 61.382 kb on + strand, within GFF2281 at 61.382 kb on + strand, within GFF2281 at 61.382 kb on + strand, within GFF2281 at 61.383 kb on - strand, within GFF2281 at 61.458 kb on - strand at 61.458 kb on - strand at 61.561 kb on - strand at 61.606 kb on + strand at 61.606 kb on + strand at 61.607 kb on - strand at 61.639 kb on - strand at 61.639 kb on - strand at 61.643 kb on + strand at 61.833 kb on - strand, within GFF2282 at 61.981 kb on + strand at 61.981 kb on + strand at 62.095 kb on + strand, within GFF2283 at 62.294 kb on + strand, within GFF2283 at 62.295 kb on - strand, within GFF2283 at 62.295 kb on - strand, within GFF2283 at 62.440 kb on + strand, within GFF2283 at 62.440 kb on + strand, within GFF2283 at 62.440 kb on + strand, within GFF2283 at 62.441 kb on - strand, within GFF2283 at 62.441 kb on - strand, within GFF2283 at 62.441 kb on - strand, within GFF2283 at 62.441 kb on - strand, within GFF2283 at 62.516 kb on - strand, within GFF2283 at 62.516 kb on - strand, within GFF2283
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 59,243 + GFF2280 0.43 -2.0 59,244 - GFF2280 0.43 -0.8 59,244 - GFF2280 0.43 -0.8 59,345 + GFF2280 0.50 -3.1 59,346 - GFF2280 0.50 +0.5 59,840 + GFF2280 0.84 -0.5 59,841 - GFF2280 0.84 -1.1 60,062 + +0.4 60,062 + +0.2 60,168 + -0.9 60,168 + +0.8 60,169 - -0.2 60,169 - -0.3 60,479 + GFF2281 0.23 -0.3 60,479 + GFF2281 0.23 -0.6 60,480 - GFF2281 0.23 +1.2 60,498 + GFF2281 0.25 +0.2 60,499 - GFF2281 0.25 -0.6 60,499 - GFF2281 0.25 +0.2 60,575 + GFF2281 0.30 +0.0 60,575 + GFF2281 0.30 +0.6 60,576 - GFF2281 0.30 -0.3 60,576 - GFF2281 0.30 -0.5 60,576 - GFF2281 0.30 -0.5 60,576 - GFF2281 0.30 +0.5 60,576 - GFF2281 0.30 +0.1 60,576 - GFF2281 0.30 -0.9 60,576 - GFF2281 0.30 +0.2 60,749 + GFF2281 0.42 -1.0 61,218 - GFF2281 0.75 +0.1 61,218 - GFF2281 0.75 -0.3 61,364 + GFF2281 0.85 -0.8 61,364 + GFF2281 0.85 +1.0 61,364 + GFF2281 0.85 -0.3 61,365 - GFF2281 0.85 +1.0 61,365 - GFF2281 0.85 +0.7 61,382 + GFF2281 0.86 -0.1 61,382 + GFF2281 0.86 -0.5 61,382 + GFF2281 0.86 +0.2 61,383 - GFF2281 0.86 +1.3 61,458 - -1.3 61,458 - -0.0 61,561 - -0.6 61,606 + -1.5 61,606 + +0.5 61,607 - +1.0 61,639 - +0.0 61,639 - -0.1 61,643 + +0.4 61,833 - GFF2282 0.65 -2.4 61,981 + -0.9 61,981 + +0.9 62,095 + GFF2283 0.14 +2.0 62,294 + GFF2283 0.32 +0.2 62,295 - GFF2283 0.32 +0.3 62,295 - GFF2283 0.32 -1.2 62,440 + GFF2283 0.46 +0.1 62,440 + GFF2283 0.46 +0.7 62,440 + GFF2283 0.46 -0.6 62,441 - GFF2283 0.46 -0.0 62,441 - GFF2283 0.46 +0.6 62,441 - GFF2283 0.46 -0.5 62,441 - GFF2283 0.46 +0.5 62,516 - GFF2283 0.53 +0.7 62,516 - GFF2283 0.53 -1.1
Or see this region's nucleotide sequence