Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2277 and GFF2278 are separated by 30 nucleotides GFF2278 and GFF2279 are separated by 8 nucleotides GFF2279 and GFF2280 are separated by 208 nucleotides
GFF2277 - RNA polymerase sigma-H factor, at 56,249 to 56,830
GFF2277
GFF2278 - Sigma factor AlgU negative regulatory protein, at 56,861 to 57,448
GFF2278
GFF2279 - Sigma factor AlgU regulatory protein MucB, at 57,457 to 58,422
GFF2279
GFF2280 - Periplasmic serine endoprotease DegP, at 58,631 to 60,064
GFF2280
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.462 kb on + strand, within GFF2277 at 56.462 kb on + strand, within GFF2277 at 56.463 kb on - strand, within GFF2277 at 56.465 kb on - strand, within GFF2277 at 56.480 kb on - strand, within GFF2277 at 56.480 kb on - strand, within GFF2277 at 56.488 kb on + strand, within GFF2277 at 56.504 kb on + strand, within GFF2277 at 56.504 kb on + strand, within GFF2277 at 56.505 kb on - strand, within GFF2277 at 56.505 kb on - strand, within GFF2277 at 56.505 kb on - strand, within GFF2277 at 56.544 kb on + strand, within GFF2277 at 56.544 kb on + strand, within GFF2277 at 56.544 kb on + strand, within GFF2277 at 56.544 kb on + strand, within GFF2277 at 56.545 kb on - strand, within GFF2277 at 56.545 kb on - strand, within GFF2277 at 56.545 kb on - strand, within GFF2277 at 56.567 kb on + strand, within GFF2277 at 56.567 kb on + strand, within GFF2277 at 56.567 kb on + strand, within GFF2277 at 56.568 kb on - strand, within GFF2277 at 56.568 kb on - strand, within GFF2277 at 56.568 kb on - strand, within GFF2277 at 56.695 kb on - strand, within GFF2277 at 56.695 kb on - strand, within GFF2277 at 56.695 kb on - strand, within GFF2277 at 56.718 kb on - strand, within GFF2277 at 56.718 kb on - strand, within GFF2277 at 57.090 kb on + strand, within GFF2278 at 57.090 kb on + strand, within GFF2278 at 57.091 kb on - strand, within GFF2278 at 57.174 kb on - strand, within GFF2278 at 57.416 kb on + strand at 57.416 kb on + strand at 57.417 kb on - strand at 57.474 kb on - strand at 57.583 kb on - strand, within GFF2279 at 57.583 kb on - strand, within GFF2279 at 57.665 kb on + strand, within GFF2279 at 57.714 kb on + strand, within GFF2279 at 57.714 kb on + strand, within GFF2279 at 57.945 kb on - strand, within GFF2279 at 58.195 kb on + strand, within GFF2279 at 58.195 kb on + strand, within GFF2279 at 58.196 kb on - strand, within GFF2279 at 58.196 kb on - strand, within GFF2279 at 58.196 kb on - strand, within GFF2279 at 58.309 kb on - strand, within GFF2279 at 58.309 kb on - strand, within GFF2279 at 58.389 kb on + strand at 58.390 kb on - strand at 58.510 kb on + strand at 58.511 kb on - strand at 58.630 kb on + strand at 58.630 kb on + strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.631 kb on - strand at 58.656 kb on - strand at 58.961 kb on + strand, within GFF2280 at 58.961 kb on + strand, within GFF2280 at 58.961 kb on + strand, within GFF2280 at 58.961 kb on + strand, within GFF2280 at 58.962 kb on - strand, within GFF2280 at 58.962 kb on - strand, within GFF2280 at 58.962 kb on - strand, within GFF2280 at 59.243 kb on + strand, within GFF2280 at 59.244 kb on - strand, within GFF2280 at 59.244 kb on - strand, within GFF2280 at 59.345 kb on + strand, within GFF2280 at 59.346 kb on - strand, within GFF2280
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 56,462 + GFF2277 0.37 -0.8 56,462 + GFF2277 0.37 +0.2 56,463 - GFF2277 0.37 +0.7 56,465 - GFF2277 0.37 +0.0 56,480 - GFF2277 0.40 +0.3 56,480 - GFF2277 0.40 -0.1 56,488 + GFF2277 0.41 +1.1 56,504 + GFF2277 0.44 -0.3 56,504 + GFF2277 0.44 +1.8 56,505 - GFF2277 0.44 +0.1 56,505 - GFF2277 0.44 -0.8 56,505 - GFF2277 0.44 +0.2 56,544 + GFF2277 0.51 +0.1 56,544 + GFF2277 0.51 -1.2 56,544 + GFF2277 0.51 -0.8 56,544 + GFF2277 0.51 +1.8 56,545 - GFF2277 0.51 -0.2 56,545 - GFF2277 0.51 +1.0 56,545 - GFF2277 0.51 +0.1 56,567 + GFF2277 0.55 -0.6 56,567 + GFF2277 0.55 -0.6 56,567 + GFF2277 0.55 +0.5 56,568 - GFF2277 0.55 +0.0 56,568 - GFF2277 0.55 +0.4 56,568 - GFF2277 0.55 -0.5 56,695 - GFF2277 0.77 -0.2 56,695 - GFF2277 0.77 -0.2 56,695 - GFF2277 0.77 -1.6 56,718 - GFF2277 0.81 -0.3 56,718 - GFF2277 0.81 +0.8 57,090 + GFF2278 0.39 -0.1 57,090 + GFF2278 0.39 +0.2 57,091 - GFF2278 0.39 +0.2 57,174 - GFF2278 0.53 +0.4 57,416 + -1.6 57,416 + +0.5 57,417 - +0.1 57,474 - +0.2 57,583 - GFF2279 0.13 +0.6 57,583 - GFF2279 0.13 +0.0 57,665 + GFF2279 0.22 +0.6 57,714 + GFF2279 0.27 -1.6 57,714 + GFF2279 0.27 +0.7 57,945 - GFF2279 0.51 +0.4 58,195 + GFF2279 0.76 +0.5 58,195 + GFF2279 0.76 +0.3 58,196 - GFF2279 0.77 +0.4 58,196 - GFF2279 0.77 +1.3 58,196 - GFF2279 0.77 -1.0 58,309 - GFF2279 0.88 +1.1 58,309 - GFF2279 0.88 +1.8 58,389 + +0.4 58,390 - +0.2 58,510 + -0.4 58,511 - -0.7 58,630 + -0.4 58,630 + -0.5 58,631 - +0.8 58,631 - -1.8 58,631 - -0.3 58,631 - -0.4 58,631 - +0.4 58,631 - +1.6 58,631 - -0.9 58,631 - +0.4 58,656 - -0.2 58,961 + GFF2280 0.23 -1.8 58,961 + GFF2280 0.23 +0.4 58,961 + GFF2280 0.23 -1.2 58,961 + GFF2280 0.23 -2.1 58,962 - GFF2280 0.23 +1.7 58,962 - GFF2280 0.23 -0.8 58,962 - GFF2280 0.23 +0.4 59,243 + GFF2280 0.43 -2.0 59,244 - GFF2280 0.43 -0.8 59,244 - GFF2280 0.43 -0.8 59,345 + GFF2280 0.50 -3.1 59,346 - GFF2280 0.50 +0.5
Or see this region's nucleotide sequence