Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2203 and GFF2204 are separated by 36 nucleotides GFF2204 and GFF2205 are separated by 1 nucleotides GFF2205 and GFF2206 are separated by 262 nucleotides
GFF2203 - Beta-ketoadipyl-CoA thiolase, at 454,174 to 455,376
GFF2203
GFF2204 - Protocatechuate 3,4-dioxygenase beta chain, at 455,413 to 456,117
GFF2204
GFF2205 - Protocatechuate 3,4-dioxygenase alpha chain, at 456,119 to 456,685
GFF2205
GFF2206 - Alpha-ketoglutarate permease, at 456,948 to 458,243
GFF2206
Position (kb) 455
456
457 Strain fitness (log2 ratio) -2
-1
0
1 at 454.645 kb on + strand, within GFF2203 at 454.645 kb on + strand, within GFF2203 at 454.693 kb on + strand, within GFF2203 at 454.694 kb on - strand, within GFF2203 at 454.746 kb on + strand, within GFF2203 at 454.747 kb on - strand, within GFF2203 at 454.771 kb on + strand, within GFF2203 at 455.251 kb on - strand, within GFF2203 at 455.251 kb on - strand, within GFF2203 at 455.391 kb on + strand at 455.391 kb on + strand at 455.391 kb on + strand at 455.391 kb on + strand at 455.392 kb on - strand at 455.392 kb on - strand at 455.392 kb on - strand at 455.465 kb on - strand at 455.480 kb on - strand at 455.480 kb on - strand at 455.522 kb on - strand, within GFF2204 at 455.813 kb on - strand, within GFF2204 at 455.843 kb on - strand, within GFF2204 at 455.938 kb on + strand, within GFF2204 at 455.938 kb on + strand, within GFF2204 at 455.939 kb on - strand, within GFF2204 at 455.939 kb on - strand, within GFF2204 at 455.939 kb on - strand, within GFF2204 at 455.939 kb on - strand, within GFF2204 at 455.939 kb on - strand, within GFF2204 at 455.965 kb on + strand, within GFF2204 at 455.966 kb on - strand, within GFF2204 at 455.977 kb on + strand, within GFF2204 at 455.977 kb on + strand, within GFF2204 at 455.977 kb on + strand, within GFF2204 at 455.978 kb on - strand, within GFF2204 at 456.052 kb on + strand at 456.052 kb on + strand at 456.115 kb on + strand at 456.115 kb on + strand at 456.115 kb on + strand at 456.116 kb on - strand at 456.116 kb on - strand at 456.128 kb on + strand at 456.128 kb on + strand at 456.128 kb on + strand at 456.129 kb on - strand at 456.159 kb on - strand at 456.159 kb on - strand at 456.159 kb on - strand at 456.159 kb on - strand at 456.161 kb on + strand at 456.161 kb on + strand at 456.317 kb on + strand, within GFF2205 at 456.317 kb on + strand, within GFF2205 at 456.317 kb on + strand, within GFF2205 at 456.317 kb on + strand, within GFF2205 at 456.318 kb on - strand, within GFF2205 at 456.318 kb on - strand, within GFF2205 at 456.524 kb on + strand, within GFF2205 at 456.626 kb on + strand, within GFF2205 at 456.626 kb on + strand, within GFF2205 at 456.626 kb on + strand, within GFF2205 at 456.626 kb on + strand, within GFF2205 at 456.627 kb on - strand, within GFF2205 at 456.639 kb on + strand at 456.639 kb on + strand at 456.680 kb on + strand at 456.801 kb on + strand at 456.829 kb on - strand at 456.837 kb on + strand at 456.908 kb on + strand at 456.908 kb on + strand at 456.908 kb on + strand at 456.909 kb on - strand at 456.909 kb on - strand at 456.915 kb on - strand at 456.932 kb on - strand at 456.970 kb on - strand at 456.970 kb on - strand at 457.050 kb on + strand at 457.050 kb on + strand at 457.051 kb on - strand at 457.051 kb on - strand at 457.056 kb on + strand at 457.056 kb on + strand at 457.074 kb on + strand at 457.075 kb on - strand at 457.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 454,645 + GFF2203 0.39 +0.4 454,645 + GFF2203 0.39 -1.0 454,693 + GFF2203 0.43 +1.2 454,694 - GFF2203 0.43 -0.0 454,746 + GFF2203 0.48 +0.2 454,747 - GFF2203 0.48 -0.6 454,771 + GFF2203 0.50 +0.1 455,251 - GFF2203 0.90 -1.2 455,251 - GFF2203 0.90 +0.1 455,391 + +0.5 455,391 + +0.5 455,391 + -1.8 455,391 + -0.6 455,392 - -0.9 455,392 - -0.7 455,392 - +1.3 455,465 - -0.6 455,480 - -1.4 455,480 - -0.4 455,522 - GFF2204 0.15 -0.5 455,813 - GFF2204 0.57 -0.3 455,843 - GFF2204 0.61 +0.4 455,938 + GFF2204 0.74 -0.1 455,938 + GFF2204 0.74 -0.1 455,939 - GFF2204 0.75 +0.4 455,939 - GFF2204 0.75 -0.5 455,939 - GFF2204 0.75 -0.7 455,939 - GFF2204 0.75 -0.9 455,939 - GFF2204 0.75 +1.2 455,965 + GFF2204 0.78 -1.3 455,966 - GFF2204 0.78 -0.5 455,977 + GFF2204 0.80 -2.2 455,977 + GFF2204 0.80 +1.4 455,977 + GFF2204 0.80 +0.8 455,978 - GFF2204 0.80 -0.4 456,052 + -0.7 456,052 + -0.0 456,115 + +0.0 456,115 + -0.3 456,115 + +0.1 456,116 - +0.3 456,116 - +0.1 456,128 + -0.2 456,128 + -0.8 456,128 + -0.2 456,129 - -1.3 456,159 - +0.4 456,159 - +0.6 456,159 - +0.0 456,159 - -0.3 456,161 + -0.5 456,161 + +0.2 456,317 + GFF2205 0.35 -0.5 456,317 + GFF2205 0.35 +1.1 456,317 + GFF2205 0.35 -0.1 456,317 + GFF2205 0.35 -0.9 456,318 - GFF2205 0.35 -0.4 456,318 - GFF2205 0.35 -0.8 456,524 + GFF2205 0.71 +0.1 456,626 + GFF2205 0.89 +0.2 456,626 + GFF2205 0.89 +0.3 456,626 + GFF2205 0.89 +0.1 456,626 + GFF2205 0.89 -0.6 456,627 - GFF2205 0.90 -1.7 456,639 + +0.3 456,639 + -0.2 456,680 + +1.3 456,801 + +0.5 456,829 - -0.0 456,837 + +1.0 456,908 + +0.3 456,908 + +1.3 456,908 + -0.1 456,909 - +0.1 456,909 - +0.3 456,915 - +0.1 456,932 - -0.8 456,970 - +0.3 456,970 - -1.9 457,050 + +0.7 457,050 + +0.3 457,051 - -0.1 457,051 - -0.6 457,056 + +0.8 457,056 + -0.5 457,074 + -0.9 457,075 - -0.5 457,075 - -1.6
Or see this region's nucleotide sequence