Strain Fitness in Pseudomonas sp. DMC3 around GFF2128

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2127 and GFF2128 are separated by 197 nucleotidesGFF2128 and GFF2129 are separated by 687 nucleotides GFF2127 - Low affinity potassium transport system protein kup, at 369,973 to 371,874 GFF2127 GFF2128 - hypothetical protein, at 372,072 to 372,398 GFF2128 GFF2129 - hypothetical protein, at 373,086 to 374,381 GFF2129 Position (kb) 372 373Strain fitness (log2 ratio) -2 -1 0 1at 371.237 kb on - strand, within GFF2127at 371.237 kb on - strand, within GFF2127at 371.237 kb on - strand, within GFF2127at 371.423 kb on + strand, within GFF2127at 371.535 kb on - strand, within GFF2127at 371.535 kb on - strand, within GFF2127at 371.540 kb on - strand, within GFF2127at 371.710 kb on + strandat 371.710 kb on + strandat 371.711 kb on - strandat 371.711 kb on - strandat 371.711 kb on - strandat 371.872 kb on + strandat 371.872 kb on + strandat 371.872 kb on + strandat 371.872 kb on + strandat 371.872 kb on + strandat 371.872 kb on + strandat 371.872 kb on + strandat 371.872 kb on + strandat 371.873 kb on - strandat 371.873 kb on - strandat 371.873 kb on - strandat 371.873 kb on - strandat 371.873 kb on - strandat 371.873 kb on - strandat 371.873 kb on - strandat 371.941 kb on + strandat 371.941 kb on + strandat 371.941 kb on + strandat 371.941 kb on + strandat 371.942 kb on - strandat 372.073 kb on + strandat 372.073 kb on + strandat 372.334 kb on + strand, within GFF2128at 372.334 kb on + strand, within GFF2128at 372.334 kb on + strand, within GFF2128at 372.335 kb on - strand, within GFF2128at 372.404 kb on + strandat 372.411 kb on + strandat 372.411 kb on + strandat 372.411 kb on + strandat 372.412 kb on - strandat 372.460 kb on + strandat 372.460 kb on + strandat 372.461 kb on - strandat 372.461 kb on - strandat 372.528 kb on + strandat 372.610 kb on - strandat 372.632 kb on + strandat 372.632 kb on + strandat 372.673 kb on + strandat 372.674 kb on - strandat 372.698 kb on + strandat 372.715 kb on + strandat 372.716 kb on - strandat 372.716 kb on - strandat 372.716 kb on - strandat 372.725 kb on + strandat 372.725 kb on + strandat 372.750 kb on + strandat 372.750 kb on + strandat 372.750 kb on + strandat 372.751 kb on - strandat 372.761 kb on + strandat 372.762 kb on - strandat 372.762 kb on - strandat 372.762 kb on - strandat 372.802 kb on + strandat 372.802 kb on + strandat 372.803 kb on - strandat 372.803 kb on - strandat 372.803 kb on - strandat 372.803 kb on - strandat 372.822 kb on - strandat 372.822 kb on - strandat 372.944 kb on - strandat 372.944 kb on - strandat 372.966 kb on - strandat 372.966 kb on - strandat 373.159 kb on + strandat 373.159 kb on + strandat 373.160 kb on - strandat 373.255 kb on + strand, within GFF2129at 373.255 kb on + strand, within GFF2129at 373.255 kb on + strand, within GFF2129at 373.255 kb on + strand, within GFF2129at 373.255 kb on + strand, within GFF2129at 373.256 kb on - strand, within GFF2129at 373.256 kb on - strand, within GFF2129at 373.256 kb on - strand, within GFF2129at 373.256 kb on - strand, within GFF2129at 373.256 kb on - strand, within GFF2129at 373.256 kb on - strand, within GFF2129at 373.256 kb on - strand, within GFF2129at 373.329 kb on + strand, within GFF2129at 373.330 kb on - strand, within GFF2129

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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371,237 - GFF2127 0.66 +1.0
371,237 - GFF2127 0.66 +0.1
371,237 - GFF2127 0.66 -0.4
371,423 + GFF2127 0.76 +0.0
371,535 - GFF2127 0.82 +0.9
371,535 - GFF2127 0.82 +0.0
371,540 - GFF2127 0.82 +0.6
371,710 + -0.7
371,710 + +1.2
371,711 - +0.6
371,711 - -1.7
371,711 - -1.9
371,872 + -1.6
371,872 + -0.5
371,872 + -0.6
371,872 + +0.1
371,872 + +1.0
371,872 + -0.1
371,872 + +0.0
371,872 + +0.4
371,873 - -0.4
371,873 - -0.6
371,873 - -0.4
371,873 - +0.1
371,873 - -0.6
371,873 - -0.3
371,873 - +0.9
371,941 + -0.1
371,941 + +0.2
371,941 + +0.1
371,941 + -0.5
371,942 - +0.1
372,073 + -0.6
372,073 + -1.0
372,334 + GFF2128 0.80 +0.0
372,334 + GFF2128 0.80 +0.4
372,334 + GFF2128 0.80 -0.3
372,335 - GFF2128 0.80 +1.1
372,404 + -1.8
372,411 + +0.4
372,411 + +0.7
372,411 + -0.2
372,412 - -0.7
372,460 + -0.8
372,460 + -1.0
372,461 - -0.0
372,461 - +0.4
372,528 + +0.3
372,610 - -0.8
372,632 + -1.3
372,632 + -0.4
372,673 + +0.7
372,674 - +0.8
372,698 + +0.0
372,715 + -1.2
372,716 - -1.4
372,716 - -0.4
372,716 - -0.7
372,725 + -0.9
372,725 + -0.7
372,750 + +0.6
372,750 + -1.5
372,750 + +0.1
372,751 - -2.1
372,761 + -0.2
372,762 - -1.2
372,762 - +0.6
372,762 - +0.6
372,802 + +0.5
372,802 + +1.0
372,803 - +0.9
372,803 - +0.5
372,803 - +0.2
372,803 - -0.2
372,822 - -0.5
372,822 - +0.0
372,944 - -0.0
372,944 - +0.4
372,966 - +1.0
372,966 - -0.4
373,159 + +0.4
373,159 + -0.2
373,160 - -0.2
373,255 + GFF2129 0.13 +0.1
373,255 + GFF2129 0.13 -0.1
373,255 + GFF2129 0.13 +0.6
373,255 + GFF2129 0.13 -0.3
373,255 + GFF2129 0.13 +1.4
373,256 - GFF2129 0.13 +0.4
373,256 - GFF2129 0.13 -0.1
373,256 - GFF2129 0.13 -0.7
373,256 - GFF2129 0.13 -2.1
373,256 - GFF2129 0.13 -0.5
373,256 - GFF2129 0.13 -0.5
373,256 - GFF2129 0.13 +0.5
373,329 + GFF2129 0.19 -0.4
373,330 - GFF2129 0.19 -0.2

Or see this region's nucleotide sequence