Strain Fitness in Pseudomonas sp. DMC3 around GFF2092

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2089 and GFF2090 are separated by 152 nucleotidesGFF2090 and GFF2091 overlap by 4 nucleotidesGFF2091 and GFF2092 overlap by 1 nucleotidesGFF2092 and GFF2093 are separated by 66 nucleotidesGFF2093 and GFF2094 overlap by 4 nucleotidesGFF2094 and GFF2095 are separated by 130 nucleotides GFF2089 - hypothetical protein, at 339,938 to 340,276 GFF2089 GFF2090 - hypothetical protein, at 340,429 to 341,013 GFF2090 GFF2091 - hypothetical protein, at 341,010 to 341,192 GFF2091 GFF2092 - hypothetical protein, at 341,192 to 342,688 GFF2092 GFF2093 - hypothetical protein, at 342,755 to 343,102 GFF2093 GFF2094 - hypothetical protein, at 343,099 to 343,395 GFF2094 GFF2095 - hypothetical protein, at 343,526 to 345,292 GFF2095 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1at 340.215 kb on - strand, within GFF2089at 340.231 kb on + strand, within GFF2089at 340.231 kb on + strand, within GFF2089at 340.231 kb on + strand, within GFF2089at 340.232 kb on - strand, within GFF2089at 340.232 kb on - strand, within GFF2089at 340.274 kb on + strandat 340.274 kb on + strandat 340.275 kb on - strandat 340.275 kb on - strandat 340.278 kb on + strandat 340.282 kb on + strandat 340.288 kb on + strandat 340.289 kb on - strandat 340.294 kb on + strandat 340.294 kb on + strandat 340.353 kb on - strandat 340.412 kb on + strandat 340.413 kb on - strandat 340.413 kb on - strandat 340.662 kb on + strand, within GFF2090at 340.662 kb on + strand, within GFF2090at 340.741 kb on + strand, within GFF2090at 340.801 kb on + strand, within GFF2090at 340.801 kb on + strand, within GFF2090at 340.802 kb on - strand, within GFF2090at 341.003 kb on + strandat 341.003 kb on + strandat 341.004 kb on - strandat 341.004 kb on - strandat 341.004 kb on - strandat 341.004 kb on - strandat 341.029 kb on + strand, within GFF2091at 341.190 kb on + strandat 341.190 kb on + strandat 341.190 kb on + strandat 341.190 kb on + strandat 341.417 kb on + strand, within GFF2092at 341.417 kb on + strand, within GFF2092at 341.417 kb on + strand, within GFF2092at 341.418 kb on - strand, within GFF2092at 341.418 kb on - strand, within GFF2092at 341.550 kb on - strand, within GFF2092at 341.979 kb on - strand, within GFF2092at 342.236 kb on + strand, within GFF2092at 342.236 kb on + strand, within GFF2092at 342.237 kb on - strand, within GFF2092at 342.237 kb on - strand, within GFF2092at 342.237 kb on - strand, within GFF2092at 342.237 kb on - strand, within GFF2092at 342.257 kb on + strand, within GFF2092at 342.258 kb on - strand, within GFF2092at 342.258 kb on - strand, within GFF2092at 342.299 kb on + strand, within GFF2092at 342.300 kb on - strand, within GFF2092at 342.300 kb on - strand, within GFF2092at 342.315 kb on - strand, within GFF2092at 342.315 kb on - strand, within GFF2092at 342.335 kb on + strand, within GFF2092at 342.336 kb on - strand, within GFF2092at 342.336 kb on - strand, within GFF2092at 342.408 kb on - strand, within GFF2092at 342.503 kb on + strand, within GFF2092at 342.504 kb on - strand, within GFF2092at 342.620 kb on + strandat 342.620 kb on + strandat 342.621 kb on - strandat 342.671 kb on + strandat 342.735 kb on + strandat 342.782 kb on + strandat 342.782 kb on + strandat 342.782 kb on + strandat 342.782 kb on + strandat 342.783 kb on - strandat 342.875 kb on + strand, within GFF2093at 342.875 kb on + strand, within GFF2093at 342.875 kb on + strand, within GFF2093at 342.876 kb on - strand, within GFF2093at 342.964 kb on + strand, within GFF2093at 342.965 kb on - strand, within GFF2093at 343.001 kb on + strand, within GFF2093at 343.001 kb on + strand, within GFF2093at 343.002 kb on - strand, within GFF2093at 343.124 kb on + strandat 343.124 kb on + strandat 343.124 kb on + strandat 343.125 kb on - strandat 343.125 kb on - strandat 343.213 kb on + strand, within GFF2094at 343.267 kb on + strand, within GFF2094at 343.267 kb on + strand, within GFF2094at 343.267 kb on + strand, within GFF2094at 343.268 kb on - strand, within GFF2094at 343.268 kb on - strand, within GFF2094at 343.268 kb on - strand, within GFF2094at 343.408 kb on - strandat 343.408 kb on - strandat 343.627 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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340,215 - GFF2089 0.82 -2.0
340,231 + GFF2089 0.86 -0.9
340,231 + GFF2089 0.86 +0.4
340,231 + GFF2089 0.86 +0.8
340,232 - GFF2089 0.87 -0.4
340,232 - GFF2089 0.87 +0.2
340,274 + -0.4
340,274 + -0.3
340,275 - +0.7
340,275 - +0.3
340,278 + -1.4
340,282 + -1.5
340,288 + -0.2
340,289 - +0.8
340,294 + +0.1
340,294 + -0.0
340,353 - +0.3
340,412 + -0.0
340,413 - +0.6
340,413 - -0.7
340,662 + GFF2090 0.40 +0.1
340,662 + GFF2090 0.40 -0.6
340,741 + GFF2090 0.53 +0.1
340,801 + GFF2090 0.64 -1.9
340,801 + GFF2090 0.64 -1.2
340,802 - GFF2090 0.64 -0.5
341,003 + -0.7
341,003 + +0.9
341,004 - +0.0
341,004 - -0.1
341,004 - -1.4
341,004 - -0.5
341,029 + GFF2091 0.10 +0.2
341,190 + +0.4
341,190 + -1.5
341,190 + -0.9
341,190 + -0.7
341,417 + GFF2092 0.15 +0.3
341,417 + GFF2092 0.15 +0.3
341,417 + GFF2092 0.15 -0.2
341,418 - GFF2092 0.15 -0.4
341,418 - GFF2092 0.15 -0.4
341,550 - GFF2092 0.24 +0.4
341,979 - GFF2092 0.53 -0.7
342,236 + GFF2092 0.70 -1.4
342,236 + GFF2092 0.70 -0.5
342,237 - GFF2092 0.70 -1.2
342,237 - GFF2092 0.70 +0.1
342,237 - GFF2092 0.70 +0.3
342,237 - GFF2092 0.70 +1.4
342,257 + GFF2092 0.71 -0.5
342,258 - GFF2092 0.71 -0.5
342,258 - GFF2092 0.71 +0.5
342,299 + GFF2092 0.74 +0.5
342,300 - GFF2092 0.74 -0.3
342,300 - GFF2092 0.74 +0.1
342,315 - GFF2092 0.75 -0.4
342,315 - GFF2092 0.75 +0.1
342,335 + GFF2092 0.76 -1.0
342,336 - GFF2092 0.76 -0.6
342,336 - GFF2092 0.76 -0.1
342,408 - GFF2092 0.81 +0.5
342,503 + GFF2092 0.88 +0.1
342,504 - GFF2092 0.88 +0.9
342,620 + +0.2
342,620 + +0.7
342,621 - +1.2
342,671 + -0.6
342,735 + -0.2
342,782 + +0.2
342,782 + +0.5
342,782 + +0.2
342,782 + +0.4
342,783 - +0.3
342,875 + GFF2093 0.34 -1.7
342,875 + GFF2093 0.34 +0.2
342,875 + GFF2093 0.34 +0.9
342,876 - GFF2093 0.35 -0.3
342,964 + GFF2093 0.60 +0.6
342,965 - GFF2093 0.60 +0.7
343,001 + GFF2093 0.71 -1.2
343,001 + GFF2093 0.71 +0.8
343,002 - GFF2093 0.71 -1.1
343,124 + +0.6
343,124 + -0.7
343,124 + -0.6
343,125 - +0.2
343,125 - +0.1
343,213 + GFF2094 0.38 -0.4
343,267 + GFF2094 0.57 -0.5
343,267 + GFF2094 0.57 +1.0
343,267 + GFF2094 0.57 +0.3
343,268 - GFF2094 0.57 +0.3
343,268 - GFF2094 0.57 +1.0
343,268 - GFF2094 0.57 +1.1
343,408 - -0.7
343,408 - +1.7
343,627 + -0.6

Or see this region's nucleotide sequence