Strain Fitness in Pseudomonas sp. DMC3 around GFF2082

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2080 and GFF2081 overlap by 13 nucleotidesGFF2081 and GFF2082 overlap by 1 nucleotidesGFF2082 and GFF2083 are separated by 210 nucleotides GFF2080 - tRNA pseudouridine synthase D, at 329,607 to 330,665 GFF2080 GFF2081 - 5'-nucleotidase SurE, at 330,653 to 331,402 GFF2081 GFF2082 - Protein-L-isoaspartate O-methyltransferase, at 331,402 to 332,076 GFF2082 GFF2083 - Murein hydrolase activator NlpD, at 332,287 to 333,156 GFF2083 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2at 330.602 kb on - strandat 330.602 kb on - strandat 330.658 kb on + strandat 330.659 kb on - strandat 330.659 kb on - strandat 330.659 kb on - strandat 330.670 kb on + strandat 330.671 kb on - strandat 330.711 kb on - strandat 330.711 kb on - strandat 330.711 kb on - strandat 330.711 kb on - strandat 330.711 kb on - strandat 330.729 kb on - strand, within GFF2081at 330.815 kb on + strand, within GFF2081at 330.957 kb on - strand, within GFF2081at 330.957 kb on - strand, within GFF2081at 331.061 kb on + strand, within GFF2081at 331.061 kb on + strand, within GFF2081at 331.119 kb on + strand, within GFF2081at 331.119 kb on + strand, within GFF2081at 331.123 kb on + strand, within GFF2081at 331.123 kb on + strand, within GFF2081at 331.123 kb on + strand, within GFF2081at 331.124 kb on - strand, within GFF2081at 331.124 kb on - strand, within GFF2081at 331.124 kb on - strand, within GFF2081at 331.124 kb on - strand, within GFF2081at 331.316 kb on + strand, within GFF2081at 331.316 kb on + strand, within GFF2081at 331.316 kb on + strand, within GFF2081at 331.317 kb on - strand, within GFF2081at 331.317 kb on - strand, within GFF2081at 331.317 kb on - strand, within GFF2081at 331.317 kb on - strand, within GFF2081at 331.483 kb on + strand, within GFF2082at 331.483 kb on + strand, within GFF2082at 331.484 kb on - strand, within GFF2082at 331.515 kb on - strand, within GFF2082at 331.576 kb on + strand, within GFF2082at 331.577 kb on - strand, within GFF2082at 331.577 kb on - strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.627 kb on + strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.628 kb on - strand, within GFF2082at 331.871 kb on - strand, within GFF2082at 331.871 kb on - strand, within GFF2082at 331.871 kb on - strand, within GFF2082at 331.907 kb on + strand, within GFF2082at 331.908 kb on - strand, within GFF2082at 332.120 kb on + strandat 332.121 kb on - strandat 332.121 kb on - strandat 332.121 kb on - strandat 332.150 kb on + strandat 332.150 kb on + strandat 332.150 kb on + strandat 332.151 kb on - strandat 332.151 kb on - strandat 332.151 kb on - strandat 332.194 kb on + strandat 332.195 kb on - strandat 332.200 kb on + strandat 332.221 kb on + strandat 332.221 kb on + strandat 332.221 kb on + strandat 332.221 kb on + strandat 332.222 kb on - strandat 332.222 kb on - strandat 332.222 kb on - strandat 332.222 kb on - strandat 332.313 kb on + strandat 332.314 kb on - strandat 332.314 kb on - strandat 332.320 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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330,602 - +0.6
330,602 - -0.9
330,658 + -1.2
330,659 - -1.6
330,659 - -1.3
330,659 - -0.3
330,670 + +0.4
330,671 - -0.2
330,711 - -0.0
330,711 - -0.2
330,711 - -0.6
330,711 - +0.8
330,711 - -1.2
330,729 - GFF2081 0.10 -0.7
330,815 + GFF2081 0.22 -1.7
330,957 - GFF2081 0.41 -1.3
330,957 - GFF2081 0.41 -0.6
331,061 + GFF2081 0.54 -2.2
331,061 + GFF2081 0.54 -1.7
331,119 + GFF2081 0.62 +0.4
331,119 + GFF2081 0.62 -0.2
331,123 + GFF2081 0.63 +0.4
331,123 + GFF2081 0.63 -1.2
331,123 + GFF2081 0.63 -0.6
331,124 - GFF2081 0.63 -1.6
331,124 - GFF2081 0.63 -1.5
331,124 - GFF2081 0.63 -1.7
331,124 - GFF2081 0.63 -0.7
331,316 + GFF2081 0.88 +0.0
331,316 + GFF2081 0.88 -0.3
331,316 + GFF2081 0.88 -0.4
331,317 - GFF2081 0.89 -0.8
331,317 - GFF2081 0.89 -0.6
331,317 - GFF2081 0.89 +0.0
331,317 - GFF2081 0.89 +0.4
331,483 + GFF2082 0.12 +0.3
331,483 + GFF2082 0.12 +0.4
331,484 - GFF2082 0.12 +0.3
331,515 - GFF2082 0.17 -0.7
331,576 + GFF2082 0.26 +0.0
331,577 - GFF2082 0.26 +0.0
331,577 - GFF2082 0.26 -0.6
331,627 + GFF2082 0.33 -2.0
331,627 + GFF2082 0.33 +0.7
331,627 + GFF2082 0.33 +0.1
331,627 + GFF2082 0.33 -0.6
331,627 + GFF2082 0.33 +0.4
331,627 + GFF2082 0.33 -1.0
331,627 + GFF2082 0.33 -1.2
331,627 + GFF2082 0.33 -0.7
331,627 + GFF2082 0.33 -0.7
331,628 - GFF2082 0.33 -0.6
331,628 - GFF2082 0.33 +0.3
331,628 - GFF2082 0.33 +0.2
331,628 - GFF2082 0.33 +0.3
331,628 - GFF2082 0.33 -0.6
331,628 - GFF2082 0.33 -0.6
331,628 - GFF2082 0.33 +0.4
331,628 - GFF2082 0.33 +0.4
331,871 - GFF2082 0.69 -1.1
331,871 - GFF2082 0.69 -0.9
331,871 - GFF2082 0.69 +0.8
331,907 + GFF2082 0.75 +0.6
331,908 - GFF2082 0.75 -0.4
332,120 + -0.9
332,121 - +0.7
332,121 - -0.2
332,121 - -0.6
332,150 + +0.0
332,150 + +0.9
332,150 + -0.4
332,151 - +0.6
332,151 - +1.0
332,151 - -0.7
332,194 + +1.9
332,195 - -0.3
332,200 + +1.4
332,221 + +0.7
332,221 + +0.4
332,221 + -0.2
332,221 + +0.1
332,222 - +0.0
332,222 - -1.7
332,222 - -0.6
332,222 - -0.5
332,313 + -0.4
332,314 - -0.6
332,314 - +0.6
332,320 - -0.6

Or see this region's nucleotide sequence