Strain Fitness in Pseudomonas sp. DMC3 around GFF2050

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2049 and GFF2050 are separated by 45 nucleotidesGFF2050 and GFF2051 are separated by 223 nucleotides GFF2049 - Sodium, potassium, lithium and rubidium/H(+) antiporter, at 292,757 to 294,388 GFF2049 GFF2050 - LL-diaminopimelate aminotransferase, at 294,434 to 295,633 GFF2050 GFF2051 - Bifunctional uridylyltransferase/uridylyl-removing enzyme, at 295,857 to 298,559 GFF2051 Position (kb) 294 295 296Strain fitness (log2 ratio) -2 -1 0 1at 293.441 kb on + strand, within GFF2049at 293.441 kb on + strand, within GFF2049at 293.441 kb on + strand, within GFF2049at 293.442 kb on - strand, within GFF2049at 293.442 kb on - strand, within GFF2049at 293.442 kb on - strand, within GFF2049at 293.442 kb on - strand, within GFF2049at 293.442 kb on - strand, within GFF2049at 293.442 kb on - strand, within GFF2049at 293.442 kb on - strand, within GFF2049at 293.445 kb on + strand, within GFF2049at 293.445 kb on + strand, within GFF2049at 293.445 kb on + strand, within GFF2049at 293.445 kb on + strand, within GFF2049at 293.446 kb on - strand, within GFF2049at 293.446 kb on - strand, within GFF2049at 293.681 kb on + strand, within GFF2049at 293.682 kb on - strand, within GFF2049at 293.682 kb on - strand, within GFF2049at 293.697 kb on + strand, within GFF2049at 293.697 kb on + strand, within GFF2049at 293.698 kb on - strand, within GFF2049at 293.958 kb on + strand, within GFF2049at 293.958 kb on + strand, within GFF2049at 293.958 kb on + strand, within GFF2049at 294.387 kb on - strandat 294.387 kb on - strandat 294.387 kb on - strandat 294.387 kb on - strandat 294.561 kb on + strand, within GFF2050at 294.648 kb on + strand, within GFF2050at 294.648 kb on + strand, within GFF2050at 294.648 kb on + strand, within GFF2050at 294.648 kb on + strand, within GFF2050at 294.649 kb on - strand, within GFF2050at 294.649 kb on - strand, within GFF2050at 294.671 kb on + strand, within GFF2050at 294.671 kb on + strand, within GFF2050at 294.672 kb on - strand, within GFF2050at 294.672 kb on - strand, within GFF2050at 294.672 kb on - strand, within GFF2050at 294.724 kb on - strand, within GFF2050at 294.813 kb on + strand, within GFF2050at 294.814 kb on - strand, within GFF2050at 294.822 kb on + strand, within GFF2050at 294.997 kb on - strand, within GFF2050at 295.203 kb on + strand, within GFF2050at 295.204 kb on - strand, within GFF2050at 295.204 kb on - strand, within GFF2050at 295.347 kb on - strand, within GFF2050at 295.453 kb on - strand, within GFF2050at 295.453 kb on - strand, within GFF2050at 295.565 kb on - strandat 295.646 kb on + strandat 295.647 kb on - strandat 295.744 kb on + strandat 295.744 kb on + strandat 295.745 kb on - strandat 295.756 kb on - strandat 295.756 kb on - strandat 295.783 kb on - strandat 295.783 kb on - strandat 295.807 kb on + strandat 295.807 kb on + strandat 295.807 kb on + strandat 295.807 kb on + strandat 295.807 kb on + strandat 295.807 kb on + strandat 295.807 kb on + strandat 295.807 kb on + strandat 295.807 kb on + strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.808 kb on - strandat 295.811 kb on + strandat 295.812 kb on - strandat 295.862 kb on + strandat 295.862 kb on + strandat 295.863 kb on - strandat 296.314 kb on + strand, within GFF2051at 296.315 kb on - strand, within GFF2051at 296.315 kb on - strand, within GFF2051at 296.315 kb on - strand, within GFF2051at 296.541 kb on + strand, within GFF2051

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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293,441 + GFF2049 0.42 -0.2
293,441 + GFF2049 0.42 -0.7
293,441 + GFF2049 0.42 -0.2
293,442 - GFF2049 0.42 -1.3
293,442 - GFF2049 0.42 -0.6
293,442 - GFF2049 0.42 -0.0
293,442 - GFF2049 0.42 +1.3
293,442 - GFF2049 0.42 +0.0
293,442 - GFF2049 0.42 +0.3
293,442 - GFF2049 0.42 +0.4
293,445 + GFF2049 0.42 +0.1
293,445 + GFF2049 0.42 -0.7
293,445 + GFF2049 0.42 +0.4
293,445 + GFF2049 0.42 -0.3
293,446 - GFF2049 0.42 -0.6
293,446 - GFF2049 0.42 -0.7
293,681 + GFF2049 0.57 -1.3
293,682 - GFF2049 0.57 -0.8
293,682 - GFF2049 0.57 -0.2
293,697 + GFF2049 0.58 -0.2
293,697 + GFF2049 0.58 +0.8
293,698 - GFF2049 0.58 +0.5
293,958 + GFF2049 0.74 -0.3
293,958 + GFF2049 0.74 -0.8
293,958 + GFF2049 0.74 +1.0
294,387 - +0.2
294,387 - +1.4
294,387 - +1.3
294,387 - -0.5
294,561 + GFF2050 0.11 -0.9
294,648 + GFF2050 0.18 -1.7
294,648 + GFF2050 0.18 +0.1
294,648 + GFF2050 0.18 +0.1
294,648 + GFF2050 0.18 -1.8
294,649 - GFF2050 0.18 -1.5
294,649 - GFF2050 0.18 -1.0
294,671 + GFF2050 0.20 -1.2
294,671 + GFF2050 0.20 -1.0
294,672 - GFF2050 0.20 +0.5
294,672 - GFF2050 0.20 -1.0
294,672 - GFF2050 0.20 -1.0
294,724 - GFF2050 0.24 -1.8
294,813 + GFF2050 0.32 -0.3
294,814 - GFF2050 0.32 -0.8
294,822 + GFF2050 0.32 -1.4
294,997 - GFF2050 0.47 -0.2
295,203 + GFF2050 0.64 -0.9
295,204 - GFF2050 0.64 -1.6
295,204 - GFF2050 0.64 -1.9
295,347 - GFF2050 0.76 -0.9
295,453 - GFF2050 0.85 +0.4
295,453 - GFF2050 0.85 -1.0
295,565 - -1.0
295,646 + -0.8
295,647 - -0.3
295,744 + -0.8
295,744 + -0.6
295,745 - -0.6
295,756 - -0.3
295,756 - -1.0
295,783 - -0.2
295,783 - +0.0
295,807 + +1.0
295,807 + +0.4
295,807 + -1.2
295,807 + +0.3
295,807 + +0.6
295,807 + -0.2
295,807 + -0.2
295,807 + -0.0
295,807 + -0.4
295,808 - -1.3
295,808 - -0.4
295,808 - +0.1
295,808 - -0.1
295,808 - +0.1
295,808 - -0.2
295,808 - +0.2
295,808 - -0.6
295,808 - +0.9
295,808 - -0.2
295,808 - +0.1
295,808 - +0.0
295,808 - -0.2
295,808 - +0.3
295,808 - -0.5
295,808 - -0.5
295,811 + -2.0
295,812 - -1.9
295,862 + +0.9
295,862 + +0.1
295,863 - +0.6
296,314 + GFF2051 0.17 -0.6
296,315 - GFF2051 0.17 -0.6
296,315 - GFF2051 0.17 -0.6
296,315 - GFF2051 0.17 -1.2
296,541 + GFF2051 0.25 -1.4

Or see this region's nucleotide sequence