Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2031 and GFF2032 are separated by 98 nucleotides GFF2032 and GFF2033 are separated by 94 nucleotides GFF2033 and GFF2034 are separated by 6 nucleotides
GFF2031 - Ribosomal RNA small subunit methyltransferase J, at 270,754 to 271,536
GFF2031
GFF2032 - hypothetical protein, at 271,635 to 272,288
GFF2032
GFF2033 - Multidrug resistance protein MdtA, at 272,383 to 273,483
GFF2033
GFF2034 - Nickel and cobalt resistance protein CnrA, at 273,490 to 276,558
GFF2034
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.502 kb on - strand at 271.502 kb on - strand at 271.510 kb on + strand at 271.510 kb on + strand at 271.535 kb on - strand at 271.632 kb on + strand at 271.632 kb on + strand at 271.633 kb on - strand at 271.633 kb on - strand at 271.636 kb on + strand at 271.636 kb on + strand at 271.636 kb on + strand at 271.637 kb on - strand at 271.637 kb on - strand at 271.637 kb on - strand at 271.637 kb on - strand at 271.637 kb on - strand at 271.663 kb on + strand at 271.663 kb on + strand at 271.664 kb on - strand at 271.664 kb on - strand at 271.673 kb on + strand at 271.673 kb on + strand at 271.674 kb on - strand at 271.741 kb on + strand, within GFF2032 at 271.742 kb on - strand, within GFF2032 at 271.954 kb on - strand, within GFF2032 at 272.007 kb on + strand, within GFF2032 at 272.007 kb on + strand, within GFF2032 at 272.007 kb on + strand, within GFF2032 at 272.008 kb on - strand, within GFF2032 at 272.008 kb on - strand, within GFF2032 at 272.122 kb on + strand, within GFF2032 at 272.123 kb on - strand, within GFF2032 at 272.182 kb on + strand, within GFF2032 at 272.300 kb on - strand at 272.322 kb on + strand at 272.322 kb on + strand at 272.322 kb on + strand at 272.325 kb on + strand at 272.325 kb on + strand at 272.325 kb on + strand at 272.328 kb on + strand at 272.346 kb on - strand at 272.346 kb on - strand at 272.349 kb on + strand at 272.350 kb on - strand at 272.492 kb on + strand at 272.551 kb on + strand, within GFF2033 at 272.748 kb on + strand, within GFF2033 at 272.749 kb on - strand, within GFF2033 at 272.749 kb on - strand, within GFF2033 at 272.807 kb on + strand, within GFF2033 at 272.807 kb on + strand, within GFF2033 at 272.808 kb on - strand, within GFF2033 at 272.878 kb on + strand, within GFF2033 at 273.277 kb on + strand, within GFF2033 at 273.277 kb on + strand, within GFF2033 at 273.277 kb on + strand, within GFF2033 at 273.410 kb on + strand at 273.410 kb on + strand at 273.410 kb on + strand at 273.411 kb on - strand at 273.411 kb on - strand at 273.481 kb on + strand at 273.482 kb on - strand at 273.522 kb on + strand at 273.536 kb on + strand at 273.537 kb on - strand at 273.724 kb on + strand at 273.918 kb on + strand, within GFF2034 at 273.919 kb on - strand, within GFF2034 at 273.919 kb on - strand, within GFF2034 at 273.919 kb on - strand, within GFF2034 at 273.919 kb on - strand, within GFF2034 at 273.919 kb on - strand, within GFF2034 at 273.919 kb on - strand, within GFF2034 at 273.919 kb on - strand, within GFF2034 at 273.919 kb on - strand, within GFF2034 at 273.922 kb on + strand, within GFF2034 at 273.923 kb on - strand, within GFF2034 at 273.923 kb on - strand, within GFF2034 at 273.923 kb on - strand, within GFF2034 at 274.181 kb on + strand, within GFF2034 at 274.181 kb on + strand, within GFF2034 at 274.217 kb on + strand, within GFF2034 at 274.248 kb on + strand, within GFF2034
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 271,502 - +0.4 271,502 - +1.1 271,510 + -0.3 271,510 + -0.5 271,535 - -0.2 271,632 + +0.2 271,632 + +0.0 271,633 - -0.4 271,633 - -0.5 271,636 + -0.2 271,636 + -1.0 271,636 + -0.7 271,637 - -0.6 271,637 - -0.8 271,637 - +1.1 271,637 - -0.8 271,637 - -0.5 271,663 + -0.6 271,663 + +0.4 271,664 - +0.5 271,664 - -0.3 271,673 + -0.8 271,673 + +0.3 271,674 - -0.6 271,741 + GFF2032 0.16 -1.1 271,742 - GFF2032 0.16 -1.6 271,954 - GFF2032 0.49 -0.8 272,007 + GFF2032 0.57 -0.2 272,007 + GFF2032 0.57 -0.4 272,007 + GFF2032 0.57 -1.0 272,008 - GFF2032 0.57 +0.8 272,008 - GFF2032 0.57 +0.4 272,122 + GFF2032 0.74 +0.8 272,123 - GFF2032 0.75 +0.9 272,182 + GFF2032 0.84 -0.5 272,300 - -0.6 272,322 + -1.9 272,322 + +0.6 272,322 + +0.6 272,325 + -0.4 272,325 + -1.2 272,325 + -0.3 272,328 + +0.8 272,346 - -0.4 272,346 - +1.0 272,349 + -0.6 272,350 - -0.8 272,492 + -0.1 272,551 + GFF2033 0.15 +1.6 272,748 + GFF2033 0.33 +1.0 272,749 - GFF2033 0.33 +0.4 272,749 - GFF2033 0.33 +0.8 272,807 + GFF2033 0.39 +0.8 272,807 + GFF2033 0.39 +0.6 272,808 - GFF2033 0.39 +0.3 272,878 + GFF2033 0.45 -0.1 273,277 + GFF2033 0.81 +1.0 273,277 + GFF2033 0.81 -0.2 273,277 + GFF2033 0.81 +0.8 273,410 + -0.6 273,410 + +0.4 273,410 + -0.9 273,411 - +0.1 273,411 - +1.0 273,481 + +0.5 273,482 - +1.0 273,522 + -0.4 273,536 + +1.2 273,537 - +0.4 273,724 + -0.3 273,918 + GFF2034 0.14 -0.0 273,919 - GFF2034 0.14 +2.4 273,919 - GFF2034 0.14 -0.4 273,919 - GFF2034 0.14 -0.8 273,919 - GFF2034 0.14 -0.2 273,919 - GFF2034 0.14 -0.7 273,919 - GFF2034 0.14 -2.7 273,919 - GFF2034 0.14 -0.3 273,919 - GFF2034 0.14 -0.1 273,922 + GFF2034 0.14 +0.6 273,923 - GFF2034 0.14 +0.0 273,923 - GFF2034 0.14 +0.5 273,923 - GFF2034 0.14 -0.4 274,181 + GFF2034 0.23 -0.0 274,181 + GFF2034 0.23 -1.3 274,217 + GFF2034 0.24 -0.3 274,248 + GFF2034 0.25 -2.8
Or see this region's nucleotide sequence