Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2020 and GFF2021 are separated by 55 nucleotides GFF2021 and GFF2022 are separated by 367 nucleotides GFF2022 and GFF2023 are separated by 213 nucleotides
GFF2020 - Peptidoglycan-associated lipoprotein, at 260,479 to 261,267
GFF2020
GFF2021 - hypothetical protein, at 261,323 to 261,727
GFF2021
GFF2022 - hypothetical protein, at 262,095 to 262,439
GFF2022
GFF2023 - Phosphoenolpyruvate carboxylase, at 262,653 to 265,283
GFF2023
Position (kb) 262
263 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 261.165 kb on - strand, within GFF2020 at 261.261 kb on + strand at 261.262 kb on - strand at 261.267 kb on + strand at 261.290 kb on + strand at 261.324 kb on + strand at 261.474 kb on + strand, within GFF2021 at 261.474 kb on + strand, within GFF2021 at 261.475 kb on - strand, within GFF2021 at 261.475 kb on - strand, within GFF2021 at 261.600 kb on + strand, within GFF2021 at 261.639 kb on - strand, within GFF2021 at 261.639 kb on - strand, within GFF2021 at 261.639 kb on - strand, within GFF2021 at 261.728 kb on + strand at 261.729 kb on - strand at 261.729 kb on - strand at 261.745 kb on + strand at 261.745 kb on + strand at 261.746 kb on - strand at 261.789 kb on + strand at 261.789 kb on + strand at 261.789 kb on + strand at 261.824 kb on + strand at 261.824 kb on + strand at 261.824 kb on + strand at 261.825 kb on - strand at 261.872 kb on + strand at 261.957 kb on + strand at 261.965 kb on + strand at 261.965 kb on + strand at 261.966 kb on - strand at 261.983 kb on - strand at 261.983 kb on - strand at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.186 kb on + strand, within GFF2022 at 262.187 kb on - strand, within GFF2022 at 262.187 kb on - strand, within GFF2022 at 262.187 kb on - strand, within GFF2022 at 262.237 kb on + strand, within GFF2022 at 262.238 kb on - strand, within GFF2022 at 262.238 kb on - strand, within GFF2022 at 262.315 kb on + strand, within GFF2022 at 262.316 kb on - strand, within GFF2022 at 262.373 kb on - strand, within GFF2022 at 262.453 kb on - strand at 262.518 kb on + strand at 262.518 kb on + strand at 262.518 kb on + strand at 262.518 kb on + strand at 262.530 kb on + strand at 262.530 kb on + strand at 262.530 kb on + strand at 262.530 kb on + strand at 262.531 kb on - strand at 262.531 kb on - strand at 262.531 kb on - strand at 262.550 kb on + strand at 262.551 kb on - strand at 262.574 kb on + strand at 262.574 kb on + strand at 262.574 kb on + strand at 262.575 kb on - strand at 262.661 kb on + strand at 262.908 kb on + strand at 262.908 kb on + strand at 262.909 kb on - strand at 262.909 kb on - strand at 263.103 kb on + strand, within GFF2023 at 263.104 kb on - strand, within GFF2023 at 263.104 kb on - strand, within GFF2023 at 263.104 kb on - strand, within GFF2023 at 263.104 kb on - strand, within GFF2023 at 263.312 kb on + strand, within GFF2023 at 263.313 kb on - strand, within GFF2023 at 263.313 kb on - strand, within GFF2023
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 261,165 - GFF2020 0.87 -0.1 261,261 + +0.0 261,262 - -0.7 261,267 + -1.9 261,290 + -1.2 261,324 + +0.1 261,474 + GFF2021 0.37 -0.1 261,474 + GFF2021 0.37 +0.2 261,475 - GFF2021 0.38 -2.8 261,475 - GFF2021 0.38 -1.6 261,600 + GFF2021 0.68 +0.4 261,639 - GFF2021 0.78 -0.9 261,639 - GFF2021 0.78 +0.0 261,639 - GFF2021 0.78 -0.6 261,728 + -0.3 261,729 - -0.2 261,729 - +0.5 261,745 + -1.1 261,745 + -1.1 261,746 - +1.1 261,789 + -0.2 261,789 + +0.3 261,789 + +2.4 261,824 + +0.3 261,824 + +1.2 261,824 + -1.5 261,825 - +0.3 261,872 + -0.1 261,957 + +0.9 261,965 + +0.9 261,965 + -0.9 261,966 - -0.3 261,983 - -0.3 261,983 - +0.7 262,186 + GFF2022 0.26 -0.7 262,186 + GFF2022 0.26 +1.1 262,186 + GFF2022 0.26 +0.8 262,186 + GFF2022 0.26 +1.4 262,186 + GFF2022 0.26 +0.1 262,186 + GFF2022 0.26 +1.5 262,186 + GFF2022 0.26 +0.6 262,187 - GFF2022 0.27 +0.2 262,187 - GFF2022 0.27 +0.2 262,187 - GFF2022 0.27 -0.0 262,237 + GFF2022 0.41 +0.2 262,238 - GFF2022 0.41 +0.4 262,238 - GFF2022 0.41 +0.8 262,315 + GFF2022 0.64 -1.0 262,316 - GFF2022 0.64 +0.4 262,373 - GFF2022 0.81 +0.6 262,453 - -1.1 262,518 + +0.4 262,518 + -2.0 262,518 + -0.2 262,518 + +0.1 262,530 + +0.3 262,530 + -0.5 262,530 + +0.1 262,530 + +0.3 262,531 - +1.2 262,531 - +0.9 262,531 - +0.7 262,550 + -0.9 262,551 - +0.4 262,574 + +0.1 262,574 + -0.3 262,574 + -1.2 262,575 - -0.2 262,661 + -0.3 262,908 + -0.2 262,908 + -0.5 262,909 - +0.2 262,909 - -0.2 263,103 + GFF2023 0.17 +0.4 263,104 - GFF2023 0.17 +0.0 263,104 - GFF2023 0.17 -0.2 263,104 - GFF2023 0.17 +0.6 263,104 - GFF2023 0.17 -0.1 263,312 + GFF2023 0.25 -0.5 263,313 - GFF2023 0.25 +2.0 263,313 - GFF2023 0.25 -2.4
Or see this region's nucleotide sequence