Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1972 and GFF1973 are separated by 147 nucleotides GFF1973 and GFF1974 are separated by 39 nucleotides GFF1974 and GFF1975 overlap by 4 nucleotides GFF1975 and GFF1976 are separated by 154 nucleotides GFF1976 and GFF1977 are separated by 100 nucleotides
GFF1972 - NADH pyrophosphatase, at 205,330 to 205,881
GFF1972
GFF1973 - putative Nudix hydrolase NudL, at 206,029 to 206,628
GFF1973
GFF1974 - Protein YrdA, at 206,668 to 207,192
GFF1974
GFF1975 - hypothetical protein, at 207,189 to 207,404
GFF1975
GFF1976 - hypothetical protein, at 207,559 to 208,026
GFF1976
GFF1977 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 208,127 to 209,308
GFF1977
Position (kb) 206
207
208 Strain fitness (log2 ratio) -1
0
1
2 at 205.682 kb on - strand, within GFF1972 at 205.768 kb on - strand, within GFF1972 at 205.782 kb on - strand, within GFF1972 at 205.906 kb on + strand at 206.042 kb on + strand at 206.042 kb on + strand at 206.043 kb on - strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.049 kb on + strand at 206.050 kb on - strand at 206.054 kb on + strand at 206.240 kb on + strand, within GFF1973 at 206.241 kb on - strand, within GFF1973 at 206.345 kb on + strand, within GFF1973 at 206.345 kb on + strand, within GFF1973 at 206.346 kb on - strand, within GFF1973 at 206.353 kb on + strand, within GFF1973 at 206.353 kb on + strand, within GFF1973 at 206.354 kb on - strand, within GFF1973 at 206.383 kb on + strand, within GFF1973 at 206.461 kb on - strand, within GFF1973 at 206.461 kb on - strand, within GFF1973 at 206.477 kb on - strand, within GFF1973 at 206.494 kb on + strand, within GFF1973 at 206.494 kb on + strand, within GFF1973 at 206.494 kb on + strand, within GFF1973 at 206.495 kb on - strand, within GFF1973 at 206.506 kb on + strand, within GFF1973 at 206.507 kb on - strand, within GFF1973 at 206.521 kb on + strand, within GFF1973 at 206.521 kb on + strand, within GFF1973 at 206.575 kb on + strand at 206.617 kb on - strand at 206.617 kb on - strand at 206.617 kb on - strand at 207.087 kb on - strand, within GFF1974 at 207.139 kb on + strand, within GFF1974 at 207.139 kb on + strand, within GFF1974 at 207.139 kb on + strand, within GFF1974 at 207.139 kb on + strand, within GFF1974 at 207.139 kb on + strand, within GFF1974 at 207.140 kb on - strand at 207.140 kb on - strand at 207.140 kb on - strand at 207.140 kb on - strand at 207.140 kb on - strand at 207.147 kb on + strand at 207.147 kb on + strand at 207.147 kb on + strand at 207.147 kb on + strand at 207.147 kb on + strand at 207.148 kb on - strand at 207.148 kb on - strand at 207.148 kb on - strand at 207.230 kb on + strand, within GFF1975 at 207.231 kb on - strand, within GFF1975 at 207.502 kb on + strand at 207.502 kb on + strand at 207.502 kb on + strand at 207.503 kb on - strand at 207.503 kb on - strand at 207.503 kb on - strand at 207.503 kb on - strand at 207.503 kb on - strand at 207.503 kb on - strand at 207.503 kb on - strand at 207.527 kb on + strand at 207.527 kb on + strand at 207.528 kb on - strand at 207.545 kb on + strand at 207.545 kb on + strand at 207.546 kb on - strand at 207.546 kb on - strand at 207.577 kb on + strand at 207.742 kb on + strand, within GFF1976 at 207.743 kb on - strand, within GFF1976 at 207.743 kb on - strand, within GFF1976 at 207.743 kb on - strand, within GFF1976 at 207.888 kb on + strand, within GFF1976 at 207.889 kb on - strand, within GFF1976 at 208.048 kb on + strand at 208.170 kb on + strand at 208.170 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 205,682 - GFF1972 0.64 +0.6 205,768 - GFF1972 0.79 -0.7 205,782 - GFF1972 0.82 +0.1 205,906 + +0.4 206,042 + +1.2 206,042 + -1.0 206,043 - -0.9 206,049 + -0.6 206,049 + +0.4 206,049 + -0.4 206,050 - -0.5 206,054 + -0.2 206,240 + GFF1973 0.35 +1.1 206,241 - GFF1973 0.35 -0.9 206,345 + GFF1973 0.53 -0.2 206,345 + GFF1973 0.53 -0.6 206,346 - GFF1973 0.53 -0.5 206,353 + GFF1973 0.54 -0.1 206,353 + GFF1973 0.54 -0.9 206,354 - GFF1973 0.54 +0.3 206,383 + GFF1973 0.59 -1.0 206,461 - GFF1973 0.72 +0.7 206,461 - GFF1973 0.72 +1.2 206,477 - GFF1973 0.75 +0.5 206,494 + GFF1973 0.78 -0.0 206,494 + GFF1973 0.78 -0.2 206,494 + GFF1973 0.78 +0.2 206,495 - GFF1973 0.78 -0.3 206,506 + GFF1973 0.80 +0.8 206,507 - GFF1973 0.80 -0.8 206,521 + GFF1973 0.82 -0.8 206,521 + GFF1973 0.82 -1.4 206,575 + +0.1 206,617 - +0.1 206,617 - -0.9 206,617 - +1.8 207,087 - GFF1974 0.80 -1.0 207,139 + GFF1974 0.90 +0.3 207,139 + GFF1974 0.90 +1.0 207,139 + GFF1974 0.90 +1.4 207,139 + GFF1974 0.90 +1.3 207,139 + GFF1974 0.90 +0.4 207,140 - +0.2 207,140 - -1.4 207,140 - +0.9 207,140 - -0.7 207,140 - -1.6 207,147 + -0.7 207,147 + -1.5 207,147 + -0.2 207,147 + -1.7 207,147 + +0.3 207,148 - -0.1 207,148 - -1.2 207,148 - +1.2 207,230 + GFF1975 0.19 -0.4 207,231 - GFF1975 0.19 -0.9 207,502 + -0.0 207,502 + +1.0 207,502 + -0.1 207,503 - +0.5 207,503 - +0.8 207,503 - +0.1 207,503 - -0.2 207,503 - -1.2 207,503 - -0.8 207,503 - -1.2 207,527 + +0.7 207,527 + -0.6 207,528 - -0.3 207,545 + -0.3 207,545 + +0.2 207,546 - -1.1 207,546 - -0.2 207,577 + -0.5 207,742 + GFF1976 0.39 -0.5 207,743 - GFF1976 0.39 -0.1 207,743 - GFF1976 0.39 -0.2 207,743 - GFF1976 0.39 +0.0 207,888 + GFF1976 0.70 -0.6 207,889 - GFF1976 0.71 -0.3 208,048 + -1.6 208,170 + -0.4 208,170 + -0.8
Or see this region's nucleotide sequence