Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1958 and GFF1959 are separated by 166 nucleotides GFF1959 and GFF1960 are separated by 39 nucleotides GFF1960 and GFF1961 are separated by 127 nucleotides
GFF1958 - GTPase Era, at 181,360 to 182,262
GFF1958
GFF1959 - DNA repair protein RecO, at 182,429 to 183,118
GFF1959
GFF1960 - Pyridoxine 5'-phosphate synthase, at 183,158 to 183,901
GFF1960
GFF1961 - Membrane-bound lytic murein transglycosylase F, at 184,029 to 185,489
GFF1961
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1 at 182.261 kb on - strand at 182.261 kb on - strand at 182.261 kb on - strand at 182.261 kb on - strand at 182.261 kb on - strand at 182.261 kb on - strand at 182.265 kb on - strand at 182.323 kb on + strand at 182.324 kb on - strand at 182.324 kb on - strand at 182.396 kb on + strand at 182.396 kb on + strand at 182.396 kb on + strand at 182.396 kb on + strand at 182.396 kb on + strand at 182.396 kb on + strand at 182.396 kb on + strand at 182.397 kb on - strand at 182.397 kb on - strand at 182.397 kb on - strand at 182.400 kb on + strand at 182.400 kb on + strand at 182.401 kb on - strand at 182.699 kb on + strand, within GFF1959 at 182.700 kb on - strand, within GFF1959 at 182.766 kb on - strand, within GFF1959 at 182.913 kb on - strand, within GFF1959 at 182.948 kb on + strand, within GFF1959 at 182.948 kb on + strand, within GFF1959 at 182.948 kb on + strand, within GFF1959 at 182.949 kb on - strand, within GFF1959 at 183.119 kb on + strand at 183.119 kb on + strand at 183.119 kb on + strand at 183.120 kb on - strand at 183.908 kb on - strand at 183.951 kb on + strand at 183.951 kb on + strand at 183.951 kb on + strand at 183.952 kb on - strand at 183.952 kb on - strand at 183.952 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 182,261 - -2.3 182,261 - -0.6 182,261 - -0.4 182,261 - -0.2 182,261 - +0.2 182,261 - -0.2 182,265 - -1.4 182,323 + +0.3 182,324 - +1.6 182,324 - +0.3 182,396 + +0.1 182,396 + +0.6 182,396 + -0.3 182,396 + -0.8 182,396 + +0.1 182,396 + -0.8 182,396 + -0.9 182,397 - -0.3 182,397 - +0.2 182,397 - +0.3 182,400 + -0.7 182,400 + -0.7 182,401 - +0.4 182,699 + GFF1959 0.39 -0.6 182,700 - GFF1959 0.39 -1.6 182,766 - GFF1959 0.49 +0.8 182,913 - GFF1959 0.70 -0.6 182,948 + GFF1959 0.75 -0.6 182,948 + GFF1959 0.75 -0.7 182,948 + GFF1959 0.75 +0.4 182,949 - GFF1959 0.75 -1.0 183,119 + +0.2 183,119 + -0.8 183,119 + -0.7 183,120 - -0.3 183,908 - +0.8 183,951 + +0.1 183,951 + +0.4 183,951 + -0.3 183,952 - +0.3 183,952 - -1.0 183,952 - +0.1
Or see this region's nucleotide sequence