Strain Fitness in Pseudomonas sp. DMC3 around GFF1793

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1792 and GFF1793 are separated by 411 nucleotidesGFF1793 and GFF1794 overlap by 8 nucleotidesGFF1794 and GFF1795 are separated by 96 nucleotides GFF1792 - hypothetical protein, at 996 to 1,712 GFF1792 GFF1793 - Sensor histidine kinase RegB, at 2,124 to 3,386 GFF1793 GFF1794 - Photosynthetic apparatus regulatory protein RegA, at 3,379 to 3,939 GFF1794 GFF1795 - Vitamin B12 transport ATP-binding protein BacA, at 4,036 to 5,763 GFF1795 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1at 1.124 kb on - strand, within GFF1792at 1.124 kb on - strand, within GFF1792at 1.124 kb on - strand, within GFF1792at 1.124 kb on - strand, within GFF1792at 1.124 kb on - strand, within GFF1792at 1.170 kb on - strand, within GFF1792at 1.172 kb on - strand, within GFF1792at 1.172 kb on - strand, within GFF1792at 1.417 kb on + strand, within GFF1792at 1.417 kb on + strand, within GFF1792at 1.417 kb on + strand, within GFF1792at 1.417 kb on + strand, within GFF1792at 1.621 kb on + strand, within GFF1792at 1.621 kb on + strand, within GFF1792at 1.621 kb on + strand, within GFF1792at 1.621 kb on + strand, within GFF1792at 1.622 kb on - strand, within GFF1792at 1.622 kb on - strand, within GFF1792at 1.622 kb on - strand, within GFF1792at 1.772 kb on + strandat 1.772 kb on + strandat 1.772 kb on + strandat 1.779 kb on + strandat 1.780 kb on - strandat 1.800 kb on - strandat 1.800 kb on - strandat 1.808 kb on + strandat 1.808 kb on + strandat 1.808 kb on + strandat 1.809 kb on - strandat 1.811 kb on - strandat 1.811 kb on - strandat 1.811 kb on - strandat 1.858 kb on - strandat 1.858 kb on - strandat 1.902 kb on + strandat 1.903 kb on - strandat 1.959 kb on + strandat 2.081 kb on + strandat 2.082 kb on - strandat 2.083 kb on + strandat 2.083 kb on + strandat 2.083 kb on + strandat 2.083 kb on + strandat 2.083 kb on + strandat 2.084 kb on - strandat 2.084 kb on - strandat 2.084 kb on - strandat 2.084 kb on - strandat 2.084 kb on - strandat 2.232 kb on + strandat 2.232 kb on + strandat 2.403 kb on + strand, within GFF1793at 2.439 kb on + strand, within GFF1793at 2.523 kb on + strand, within GFF1793at 2.523 kb on + strand, within GFF1793at 2.523 kb on + strand, within GFF1793at 3.312 kb on + strandat 3.312 kb on + strandat 3.313 kb on - strandat 3.314 kb on + strandat 3.314 kb on + strandat 3.314 kb on + strandat 3.315 kb on - strandat 3.974 kb on + strandat 3.975 kb on - strandat 3.992 kb on + strandat 3.992 kb on + strandat 3.992 kb on + strandat 3.993 kb on - strandat 3.993 kb on - strandat 4.018 kb on + strandat 4.019 kb on - strandat 4.019 kb on - strandat 4.019 kb on - strandat 4.022 kb on - strandat 4.032 kb on - strandat 4.054 kb on + strandat 4.055 kb on - strandat 4.121 kb on - strandat 4.170 kb on - strandat 4.170 kb on - strandat 4.170 kb on - strandat 4.222 kb on + strand, within GFF1795at 4.223 kb on - strand, within GFF1795at 4.223 kb on - strand, within GFF1795at 4.223 kb on - strand, within GFF1795at 4.234 kb on + strand, within GFF1795at 4.285 kb on + strand, within GFF1795at 4.285 kb on + strand, within GFF1795at 4.328 kb on - strand, within GFF1795at 4.336 kb on + strand, within GFF1795at 4.336 kb on + strand, within GFF1795at 4.337 kb on - strand, within GFF1795

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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1,124 - GFF1792 0.18 +0.0
1,124 - GFF1792 0.18 -0.3
1,124 - GFF1792 0.18 +0.2
1,124 - GFF1792 0.18 -0.2
1,124 - GFF1792 0.18 -0.5
1,170 - GFF1792 0.24 -0.7
1,172 - GFF1792 0.25 -0.0
1,172 - GFF1792 0.25 -0.1
1,417 + GFF1792 0.59 +0.2
1,417 + GFF1792 0.59 -1.5
1,417 + GFF1792 0.59 -0.3
1,417 + GFF1792 0.59 +0.7
1,621 + GFF1792 0.87 -0.2
1,621 + GFF1792 0.87 -0.3
1,621 + GFF1792 0.87 +0.1
1,621 + GFF1792 0.87 +0.6
1,622 - GFF1792 0.87 +0.2
1,622 - GFF1792 0.87 +0.1
1,622 - GFF1792 0.87 +0.6
1,772 + +0.3
1,772 + +1.4
1,772 + -0.1
1,779 + -0.5
1,780 - +0.4
1,800 - -0.2
1,800 - +1.6
1,808 + +0.1
1,808 + -1.2
1,808 + -0.4
1,809 - -1.0
1,811 - -0.4
1,811 - -0.8
1,811 - -0.2
1,858 - -0.3
1,858 - +0.1
1,902 + -1.6
1,903 - -1.0
1,959 + +0.1
2,081 + +0.4
2,082 - -0.7
2,083 + -0.3
2,083 + -1.0
2,083 + +1.1
2,083 + +0.2
2,083 + -0.5
2,084 - +0.7
2,084 - -0.9
2,084 - +0.1
2,084 - -0.7
2,084 - +0.2
2,232 + +0.2
2,232 + -1.3
2,403 + GFF1793 0.22 +1.7
2,439 + GFF1793 0.25 +0.4
2,523 + GFF1793 0.32 +1.0
2,523 + GFF1793 0.32 -0.4
2,523 + GFF1793 0.32 +1.2
3,312 + +0.7
3,312 + +0.0
3,313 - +1.0
3,314 + +0.0
3,314 + -0.9
3,314 + -0.6
3,315 - -0.6
3,974 + -1.0
3,975 - -1.1
3,992 + +0.7
3,992 + -1.5
3,992 + +0.8
3,993 - +0.8
3,993 - +0.4
4,018 + -0.3
4,019 - +0.0
4,019 - -0.0
4,019 - +0.1
4,022 - +0.1
4,032 - +0.1
4,054 + -0.3
4,055 - +0.5
4,121 - -0.5
4,170 - +1.2
4,170 - -0.0
4,170 - +0.0
4,222 + GFF1795 0.11 +0.3
4,223 - GFF1795 0.11 -0.5
4,223 - GFF1795 0.11 +0.5
4,223 - GFF1795 0.11 +0.2
4,234 + GFF1795 0.11 -0.2
4,285 + GFF1795 0.14 -0.7
4,285 + GFF1795 0.14 +0.1
4,328 - GFF1795 0.17 -0.9
4,336 + GFF1795 0.17 +0.0
4,336 + GFF1795 0.17 -1.0
4,337 - GFF1795 0.17 -0.4

Or see this region's nucleotide sequence