Strain Fitness in Pseudomonas sp. DMC3 around GFF1776

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1775 and GFF1776 are separated by 9 nucleotidesGFF1776 and GFF1777 are separated by 877 nucleotides GFF1775 - hypothetical protein, at 573,550 to 576,060 GFF1775 GFF1776 - hypothetical protein, at 576,070 to 576,696 GFF1776 GFF1777 - hypothetical protein, at 577,574 to 578,158 GFF1777 Position (kb) 576 577Strain fitness (log2 ratio) -2 -1 0 1 2at 575.073 kb on + strand, within GFF1775at 575.073 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.076 kb on + strand, within GFF1775at 575.077 kb on - strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.080 kb on + strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.081 kb on - strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.086 kb on + strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.087 kb on - strand, within GFF1775at 575.091 kb on + strand, within GFF1775at 575.091 kb on + strand, within GFF1775at 575.091 kb on + strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.092 kb on - strand, within GFF1775at 575.264 kb on + strand, within GFF1775at 575.319 kb on + strand, within GFF1775at 575.320 kb on - strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.321 kb on + strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.322 kb on - strand, within GFF1775at 575.339 kb on + strand, within GFF1775at 575.339 kb on + strand, within GFF1775at 575.340 kb on - strand, within GFF1775at 575.340 kb on - strand, within GFF1775at 575.340 kb on - strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.399 kb on + strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.400 kb on - strand, within GFF1775at 575.562 kb on - strand, within GFF1775at 575.562 kb on - strand, within GFF1775at 575.577 kb on + strand, within GFF1775at 575.577 kb on + strand, within GFF1775at 575.578 kb on - strand, within GFF1775at 575.664 kb on - strand, within GFF1775at 575.676 kb on + strand, within GFF1775at 575.679 kb on - strand, within GFF1775at 575.709 kb on - strand, within GFF1775at 575.738 kb on - strand, within GFF1775at 575.740 kb on - strand, within GFF1775at 575.844 kb on - strandat 576.038 kb on - strandat 576.043 kb on - strandat 576.058 kb on + strandat 576.102 kb on + strandat 576.231 kb on + strand, within GFF1776at 576.232 kb on - strand, within GFF1776at 576.285 kb on + strand, within GFF1776at 576.432 kb on - strand, within GFF1776at 576.496 kb on + strand, within GFF1776at 576.899 kb on - strandat 576.900 kb on + strandat 576.900 kb on + strandat 576.901 kb on - strandat 576.901 kb on - strandat 576.902 kb on + strandat 576.950 kb on - strandat 577.045 kb on - strandat 577.080 kb on - strandat 577.169 kb on - strandat 577.188 kb on + strandat 577.202 kb on + strandat 577.255 kb on + strandat 577.373 kb on - strandat 577.373 kb on - strandat 577.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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575,073 + GFF1775 0.61 -1.2
575,073 + GFF1775 0.61 +0.8
575,076 + GFF1775 0.61 -0.2
575,076 + GFF1775 0.61 -0.9
575,076 + GFF1775 0.61 -0.3
575,076 + GFF1775 0.61 -0.1
575,076 + GFF1775 0.61 -0.7
575,076 + GFF1775 0.61 +0.2
575,077 - GFF1775 0.61 +0.9
575,080 + GFF1775 0.61 +1.2
575,080 + GFF1775 0.61 +1.2
575,080 + GFF1775 0.61 -2.3
575,080 + GFF1775 0.61 +0.7
575,080 + GFF1775 0.61 +0.5
575,081 - GFF1775 0.61 -0.0
575,081 - GFF1775 0.61 -1.6
575,081 - GFF1775 0.61 +0.4
575,081 - GFF1775 0.61 -0.2
575,081 - GFF1775 0.61 +0.1
575,081 - GFF1775 0.61 -0.6
575,081 - GFF1775 0.61 +0.1
575,081 - GFF1775 0.61 +0.7
575,086 + GFF1775 0.61 +0.7
575,086 + GFF1775 0.61 +0.1
575,086 + GFF1775 0.61 +0.4
575,086 + GFF1775 0.61 +0.7
575,086 + GFF1775 0.61 -0.1
575,086 + GFF1775 0.61 -0.9
575,086 + GFF1775 0.61 +1.2
575,086 + GFF1775 0.61 +0.4
575,086 + GFF1775 0.61 +0.0
575,086 + GFF1775 0.61 -0.2
575,086 + GFF1775 0.61 -1.7
575,087 - GFF1775 0.61 +0.3
575,087 - GFF1775 0.61 -0.1
575,087 - GFF1775 0.61 +0.8
575,087 - GFF1775 0.61 +0.6
575,087 - GFF1775 0.61 -0.9
575,087 - GFF1775 0.61 -0.5
575,087 - GFF1775 0.61 -0.7
575,087 - GFF1775 0.61 -0.8
575,087 - GFF1775 0.61 -0.8
575,087 - GFF1775 0.61 -0.2
575,087 - GFF1775 0.61 -0.4
575,087 - GFF1775 0.61 +0.8
575,091 + GFF1775 0.61 -0.2
575,091 + GFF1775 0.61 -2.4
575,091 + GFF1775 0.61 -0.1
575,092 - GFF1775 0.61 +1.0
575,092 - GFF1775 0.61 -0.5
575,092 - GFF1775 0.61 -0.1
575,092 - GFF1775 0.61 +0.8
575,092 - GFF1775 0.61 +0.9
575,092 - GFF1775 0.61 +1.1
575,092 - GFF1775 0.61 -0.6
575,092 - GFF1775 0.61 +0.0
575,092 - GFF1775 0.61 -0.5
575,264 + GFF1775 0.68 -0.7
575,319 + GFF1775 0.70 -0.4
575,320 - GFF1775 0.70 -1.3
575,321 + GFF1775 0.71 +0.3
575,321 + GFF1775 0.71 +1.1
575,321 + GFF1775 0.71 +0.6
575,321 + GFF1775 0.71 -0.5
575,321 + GFF1775 0.71 -0.6
575,321 + GFF1775 0.71 -0.2
575,321 + GFF1775 0.71 -0.5
575,321 + GFF1775 0.71 -0.5
575,321 + GFF1775 0.71 -0.6
575,321 + GFF1775 0.71 +0.3
575,321 + GFF1775 0.71 +0.7
575,321 + GFF1775 0.71 -0.1
575,321 + GFF1775 0.71 -0.4
575,321 + GFF1775 0.71 -0.4
575,321 + GFF1775 0.71 +2.0
575,321 + GFF1775 0.71 +2.1
575,322 - GFF1775 0.71 +0.4
575,322 - GFF1775 0.71 -1.0
575,322 - GFF1775 0.71 -0.6
575,322 - GFF1775 0.71 +0.8
575,322 - GFF1775 0.71 -0.3
575,322 - GFF1775 0.71 -1.0
575,322 - GFF1775 0.71 -0.7
575,322 - GFF1775 0.71 +0.2
575,322 - GFF1775 0.71 +0.4
575,322 - GFF1775 0.71 +0.7
575,339 + GFF1775 0.71 +1.2
575,339 + GFF1775 0.71 -0.0
575,340 - GFF1775 0.71 +0.9
575,340 - GFF1775 0.71 -2.1
575,340 - GFF1775 0.71 -1.1
575,399 + GFF1775 0.74 -0.4
575,399 + GFF1775 0.74 +0.1
575,399 + GFF1775 0.74 -0.2
575,399 + GFF1775 0.74 +0.9
575,399 + GFF1775 0.74 -0.2
575,400 - GFF1775 0.74 -1.0
575,400 - GFF1775 0.74 +0.2
575,400 - GFF1775 0.74 +0.1
575,400 - GFF1775 0.74 -1.0
575,400 - GFF1775 0.74 +1.2
575,562 - GFF1775 0.80 -0.1
575,562 - GFF1775 0.80 -0.2
575,577 + GFF1775 0.81 +1.4
575,577 + GFF1775 0.81 -0.8
575,578 - GFF1775 0.81 -0.8
575,664 - GFF1775 0.84 +0.2
575,676 + GFF1775 0.85 -0.9
575,679 - GFF1775 0.85 +0.2
575,709 - GFF1775 0.86 -0.4
575,738 - GFF1775 0.87 -1.4
575,740 - GFF1775 0.87 -0.1
575,844 - +1.2
576,038 - +0.1
576,043 - +0.4
576,058 + -1.6
576,102 + +0.6
576,231 + GFF1776 0.26 +0.8
576,232 - GFF1776 0.26 +0.2
576,285 + GFF1776 0.34 +0.1
576,432 - GFF1776 0.58 +0.4
576,496 + GFF1776 0.68 +1.2
576,899 - -1.2
576,900 + -0.1
576,900 + -0.6
576,901 - -0.5
576,901 - -1.5
576,902 + -0.9
576,950 - -0.9
577,045 - +1.1
577,080 - -0.1
577,169 - +0.5
577,188 + +0.6
577,202 + -0.0
577,255 + +0.4
577,373 - +0.1
577,373 - -0.5
577,519 - -0.6

Or see this region's nucleotide sequence