Strain Fitness in Pseudomonas sp. DMC3 around GFF1759

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1758 and GFF1759 are separated by 102 nucleotidesGFF1759 and GFF1760 are separated by 157 nucleotides GFF1758 - Glucarate dehydratase, at 542,953 to 544,227 GFF1758 GFF1759 - Glycine cleavage system transcriptional activator, at 544,330 to 545,214 GFF1759 GFF1760 - putative protein, at 545,372 to 548,398 GFF1760 Position (kb) 544 545 546Strain fitness (log2 ratio) -1 0 1at 543.392 kb on - strand, within GFF1758at 543.406 kb on + strand, within GFF1758at 543.406 kb on + strand, within GFF1758at 543.406 kb on + strand, within GFF1758at 543.407 kb on - strand, within GFF1758at 543.417 kb on + strand, within GFF1758at 543.417 kb on + strand, within GFF1758at 543.418 kb on - strand, within GFF1758at 543.418 kb on - strand, within GFF1758at 543.430 kb on + strand, within GFF1758at 543.430 kb on + strand, within GFF1758at 543.431 kb on - strand, within GFF1758at 543.682 kb on + strand, within GFF1758at 543.683 kb on - strand, within GFF1758at 543.759 kb on + strand, within GFF1758at 543.760 kb on - strand, within GFF1758at 543.760 kb on - strand, within GFF1758at 543.760 kb on - strand, within GFF1758at 543.858 kb on + strand, within GFF1758at 543.858 kb on + strand, within GFF1758at 543.982 kb on + strand, within GFF1758at 544.001 kb on - strand, within GFF1758at 544.189 kb on + strandat 544.189 kb on + strandat 544.190 kb on - strandat 544.190 kb on - strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.273 kb on + strandat 544.274 kb on - strandat 544.274 kb on - strandat 544.274 kb on - strandat 544.274 kb on - strandat 544.274 kb on - strandat 544.387 kb on - strandat 544.397 kb on + strandat 544.398 kb on - strandat 544.406 kb on + strandat 544.406 kb on + strandat 544.407 kb on - strandat 544.407 kb on - strandat 544.409 kb on + strandat 544.409 kb on + strandat 544.410 kb on - strandat 544.410 kb on - strandat 544.410 kb on - strandat 544.410 kb on - strandat 544.410 kb on - strandat 544.410 kb on - strandat 544.410 kb on - strandat 544.856 kb on + strand, within GFF1759at 544.856 kb on + strand, within GFF1759at 544.856 kb on + strand, within GFF1759at 544.857 kb on - strand, within GFF1759at 544.923 kb on + strand, within GFF1759at 545.003 kb on + strand, within GFF1759at 545.003 kb on + strand, within GFF1759at 545.141 kb on + strandat 545.141 kb on + strandat 545.141 kb on + strandat 545.141 kb on + strandat 545.141 kb on + strandat 545.142 kb on - strandat 545.246 kb on - strandat 545.246 kb on - strandat 545.513 kb on + strandat 545.513 kb on + strandat 545.513 kb on + strandat 545.513 kb on + strandat 545.513 kb on + strandat 545.513 kb on + strandat 545.514 kb on - strandat 545.514 kb on - strandat 545.514 kb on - strandat 545.514 kb on - strandat 545.879 kb on + strand, within GFF1760at 545.880 kb on - strand, within GFF1760at 546.011 kb on + strand, within GFF1760at 546.012 kb on - strand, within GFF1760at 546.012 kb on - strand, within GFF1760at 546.012 kb on - strand, within GFF1760at 546.096 kb on - strand, within GFF1760at 546.201 kb on + strand, within GFF1760at 546.201 kb on + strand, within GFF1760at 546.201 kb on + strand, within GFF1760at 546.202 kb on - strand, within GFF1760at 546.202 kb on - strand, within GFF1760

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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543,392 - GFF1758 0.34 -0.3
543,406 + GFF1758 0.36 -0.7
543,406 + GFF1758 0.36 -1.4
543,406 + GFF1758 0.36 -0.4
543,407 - GFF1758 0.36 -0.8
543,417 + GFF1758 0.36 -0.1
543,417 + GFF1758 0.36 -0.6
543,418 - GFF1758 0.36 -0.7
543,418 - GFF1758 0.36 -0.1
543,430 + GFF1758 0.37 +0.1
543,430 + GFF1758 0.37 -0.7
543,431 - GFF1758 0.37 +0.2
543,682 + GFF1758 0.57 -0.1
543,683 - GFF1758 0.57 +0.5
543,759 + GFF1758 0.63 -0.0
543,760 - GFF1758 0.63 +0.2
543,760 - GFF1758 0.63 -1.0
543,760 - GFF1758 0.63 +1.0
543,858 + GFF1758 0.71 +0.2
543,858 + GFF1758 0.71 -0.5
543,982 + GFF1758 0.81 -0.3
544,001 - GFF1758 0.82 -0.8
544,189 + -0.7
544,189 + +0.1
544,190 - +0.0
544,190 - -0.6
544,273 + -1.1
544,273 + +0.6
544,273 + -1.0
544,273 + -0.5
544,273 + +0.6
544,273 + -0.2
544,273 + -0.4
544,273 + +0.8
544,273 + -1.3
544,273 + +0.2
544,273 + -1.6
544,274 - -0.3
544,274 - -0.8
544,274 - -0.5
544,274 - +0.2
544,274 - -0.1
544,387 - -0.6
544,397 + +0.8
544,398 - -0.7
544,406 + +0.2
544,406 + -0.1
544,407 - -0.2
544,407 - +0.2
544,409 + -0.4
544,409 + +0.4
544,410 - -0.1
544,410 - -0.1
544,410 - -0.2
544,410 - +0.7
544,410 - +0.4
544,410 - +0.2
544,410 - -0.0
544,856 + GFF1759 0.59 -1.6
544,856 + GFF1759 0.59 +1.7
544,856 + GFF1759 0.59 +0.4
544,857 - GFF1759 0.60 +0.1
544,923 + GFF1759 0.67 +0.4
545,003 + GFF1759 0.76 +1.5
545,003 + GFF1759 0.76 -0.8
545,141 + -0.9
545,141 + -0.9
545,141 + +0.3
545,141 + -0.5
545,141 + +0.1
545,142 - -0.2
545,246 - +0.4
545,246 - -0.6
545,513 + -1.0
545,513 + -0.1
545,513 + -0.1
545,513 + -0.5
545,513 + +1.0
545,513 + +1.2
545,514 - -0.2
545,514 - -1.4
545,514 - -0.8
545,514 - +1.0
545,879 + GFF1760 0.17 +0.8
545,880 - GFF1760 0.17 -0.0
546,011 + GFF1760 0.21 +0.1
546,012 - GFF1760 0.21 -1.7
546,012 - GFF1760 0.21 +0.1
546,012 - GFF1760 0.21 +0.7
546,096 - GFF1760 0.24 +0.1
546,201 + GFF1760 0.27 -0.5
546,201 + GFF1760 0.27 +0.1
546,201 + GFF1760 0.27 +0.8
546,202 - GFF1760 0.27 +0.6
546,202 - GFF1760 0.27 -0.4

Or see this region's nucleotide sequence