Strain Fitness in Pseudomonas sp. DMC3 around GFF1730

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1728 and GFF1729 are separated by 397 nucleotidesGFF1729 and GFF1730 overlap by 4 nucleotidesGFF1730 and GFF1731 are separated by 125 nucleotides GFF1728 - hypothetical protein, at 519,978 to 520,250 GFF1728 GFF1729 - hypothetical protein, at 520,648 to 521,118 GFF1729 GFF1730 - hypothetical protein, at 521,115 to 521,312 GFF1730 GFF1731 - hypothetical protein, at 521,438 to 522,454 GFF1731 Position (kb) 521 522Strain fitness (log2 ratio) -2 -1 0 1 2at 520.151 kb on + strand, within GFF1728at 520.151 kb on + strand, within GFF1728at 520.152 kb on - strand, within GFF1728at 520.250 kb on + strandat 520.250 kb on + strandat 520.250 kb on + strandat 520.250 kb on + strandat 520.250 kb on + strandat 520.250 kb on + strandat 520.250 kb on + strandat 520.250 kb on + strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.251 kb on - strandat 520.304 kb on + strandat 520.305 kb on - strandat 520.322 kb on + strandat 520.323 kb on - strandat 520.334 kb on + strandat 520.335 kb on - strandat 520.354 kb on + strandat 520.358 kb on + strandat 520.359 kb on - strandat 520.359 kb on - strandat 520.380 kb on + strandat 520.380 kb on + strandat 520.381 kb on - strandat 520.381 kb on - strandat 520.381 kb on - strandat 520.381 kb on - strandat 520.499 kb on - strandat 520.499 kb on - strandat 520.512 kb on + strandat 520.512 kb on + strandat 520.513 kb on - strandat 520.518 kb on - strandat 520.660 kb on - strandat 520.668 kb on + strandat 520.738 kb on + strand, within GFF1729at 520.738 kb on + strand, within GFF1729at 520.738 kb on + strand, within GFF1729at 520.738 kb on + strand, within GFF1729at 520.738 kb on + strand, within GFF1729at 520.739 kb on - strand, within GFF1729at 520.739 kb on - strand, within GFF1729at 520.739 kb on - strand, within GFF1729at 520.768 kb on + strand, within GFF1729at 520.768 kb on + strand, within GFF1729at 520.768 kb on + strand, within GFF1729at 520.768 kb on + strand, within GFF1729at 520.769 kb on - strand, within GFF1729at 520.769 kb on - strand, within GFF1729at 520.769 kb on - strand, within GFF1729at 520.769 kb on - strand, within GFF1729at 520.802 kb on + strand, within GFF1729at 520.803 kb on - strand, within GFF1729at 520.937 kb on - strand, within GFF1729at 520.989 kb on + strand, within GFF1729at 520.989 kb on + strand, within GFF1729at 521.236 kb on - strand, within GFF1730at 521.236 kb on - strand, within GFF1730at 521.311 kb on - strandat 521.354 kb on + strandat 521.604 kb on - strand, within GFF1731at 521.620 kb on + strand, within GFF1731at 521.621 kb on - strand, within GFF1731at 521.638 kb on + strand, within GFF1731at 521.638 kb on + strand, within GFF1731at 521.638 kb on + strand, within GFF1731at 521.638 kb on + strand, within GFF1731at 521.638 kb on + strand, within GFF1731at 521.639 kb on - strand, within GFF1731at 521.639 kb on - strand, within GFF1731at 521.639 kb on - strand, within GFF1731at 521.639 kb on - strand, within GFF1731at 521.641 kb on + strand, within GFF1731at 521.641 kb on + strand, within GFF1731at 521.763 kb on + strand, within GFF1731at 521.798 kb on + strand, within GFF1731at 521.877 kb on - strand, within GFF1731at 521.981 kb on + strand, within GFF1731at 521.981 kb on + strand, within GFF1731at 521.999 kb on + strand, within GFF1731at 522.000 kb on - strand, within GFF1731at 522.000 kb on - strand, within GFF1731at 522.083 kb on + strand, within GFF1731at 522.083 kb on + strand, within GFF1731at 522.083 kb on + strand, within GFF1731at 522.084 kb on - strand, within GFF1731at 522.084 kb on - strand, within GFF1731at 522.084 kb on - strand, within GFF1731at 522.084 kb on - strand, within GFF1731at 522.084 kb on - strand, within GFF1731at 522.086 kb on + strand, within GFF1731at 522.086 kb on + strand, within GFF1731

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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520,151 + GFF1728 0.63 +0.0
520,151 + GFF1728 0.63 -0.8
520,152 - GFF1728 0.64 -0.4
520,250 + -0.2
520,250 + -0.3
520,250 + -0.1
520,250 + +0.5
520,250 + -0.1
520,250 + -0.7
520,250 + +0.6
520,250 + -0.8
520,251 - +0.1
520,251 - -0.1
520,251 - +1.8
520,251 - +1.4
520,251 - -0.0
520,251 - -0.1
520,251 - -0.8
520,251 - +0.6
520,251 - +1.0
520,251 - +0.6
520,251 - +0.7
520,251 - +0.6
520,304 + -0.1
520,305 - -0.0
520,322 + +0.3
520,323 - +0.4
520,334 + -0.9
520,335 - +0.7
520,354 + +0.4
520,358 + -0.3
520,359 - -1.5
520,359 - -1.4
520,380 + -0.1
520,380 + -2.1
520,381 - +0.4
520,381 - -0.2
520,381 - -1.3
520,381 - -0.6
520,499 - +0.4
520,499 - -0.1
520,512 + +0.2
520,512 + -0.4
520,513 - -0.1
520,518 - -1.0
520,660 - +0.3
520,668 + -0.6
520,738 + GFF1729 0.19 +1.5
520,738 + GFF1729 0.19 -0.3
520,738 + GFF1729 0.19 -0.2
520,738 + GFF1729 0.19 -0.4
520,738 + GFF1729 0.19 -0.6
520,739 - GFF1729 0.19 +0.3
520,739 - GFF1729 0.19 -0.8
520,739 - GFF1729 0.19 -0.4
520,768 + GFF1729 0.25 -1.9
520,768 + GFF1729 0.25 +0.9
520,768 + GFF1729 0.25 -0.9
520,768 + GFF1729 0.25 +0.1
520,769 - GFF1729 0.26 +0.6
520,769 - GFF1729 0.26 +0.7
520,769 - GFF1729 0.26 +1.1
520,769 - GFF1729 0.26 +1.2
520,802 + GFF1729 0.33 +0.9
520,803 - GFF1729 0.33 +0.7
520,937 - GFF1729 0.61 -1.0
520,989 + GFF1729 0.72 -0.5
520,989 + GFF1729 0.72 +1.1
521,236 - GFF1730 0.61 +0.7
521,236 - GFF1730 0.61 +0.3
521,311 - -0.5
521,354 + -0.5
521,604 - GFF1731 0.16 -0.3
521,620 + GFF1731 0.18 -0.5
521,621 - GFF1731 0.18 -0.7
521,638 + GFF1731 0.20 +0.9
521,638 + GFF1731 0.20 +0.7
521,638 + GFF1731 0.20 -0.1
521,638 + GFF1731 0.20 +0.5
521,638 + GFF1731 0.20 -0.3
521,639 - GFF1731 0.20 -0.2
521,639 - GFF1731 0.20 +0.1
521,639 - GFF1731 0.20 -0.0
521,639 - GFF1731 0.20 +0.1
521,641 + GFF1731 0.20 -0.1
521,641 + GFF1731 0.20 -0.1
521,763 + GFF1731 0.32 +1.0
521,798 + GFF1731 0.35 +0.8
521,877 - GFF1731 0.43 +0.1
521,981 + GFF1731 0.53 +2.2
521,981 + GFF1731 0.53 -0.4
521,999 + GFF1731 0.55 -0.0
522,000 - GFF1731 0.55 +0.7
522,000 - GFF1731 0.55 +0.5
522,083 + GFF1731 0.63 -0.2
522,083 + GFF1731 0.63 -0.6
522,083 + GFF1731 0.63 -1.3
522,084 - GFF1731 0.64 +0.2
522,084 - GFF1731 0.64 +0.1
522,084 - GFF1731 0.64 -0.4
522,084 - GFF1731 0.64 +0.4
522,084 - GFF1731 0.64 -0.1
522,086 + GFF1731 0.64 -0.5
522,086 + GFF1731 0.64 -0.3

Or see this region's nucleotide sequence