Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1616 and GFF1617 are separated by 60 nucleotides GFF1617 and GFF1618 are separated by 43 nucleotides
GFF1616 - Solute-binding protein, at 399,580 to 400,554
GFF1616
GFF1617 - 6-deoxy-6-sulfogluconolactonase, at 400,615 to 401,508
GFF1617
GFF1618 - Uronate dehydrogenase, at 401,552 to 402,376
GFF1618
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1 at 399.617 kb on + strand at 399.618 kb on - strand at 399.659 kb on + strand at 399.746 kb on - strand, within GFF1616 at 399.746 kb on - strand, within GFF1616 at 399.746 kb on - strand, within GFF1616 at 399.746 kb on - strand, within GFF1616 at 399.875 kb on + strand, within GFF1616 at 399.876 kb on - strand, within GFF1616 at 400.042 kb on + strand, within GFF1616 at 400.042 kb on + strand, within GFF1616 at 400.043 kb on - strand, within GFF1616 at 400.097 kb on + strand, within GFF1616 at 400.097 kb on + strand, within GFF1616 at 400.097 kb on + strand, within GFF1616 at 400.098 kb on - strand, within GFF1616 at 400.098 kb on - strand, within GFF1616 at 400.111 kb on - strand, within GFF1616 at 400.203 kb on + strand, within GFF1616 at 400.367 kb on + strand, within GFF1616 at 400.367 kb on + strand, within GFF1616 at 400.367 kb on + strand, within GFF1616 at 400.367 kb on + strand, within GFF1616 at 400.367 kb on + strand, within GFF1616 at 400.368 kb on - strand, within GFF1616 at 400.368 kb on - strand, within GFF1616 at 400.443 kb on - strand, within GFF1616 at 400.616 kb on + strand at 400.789 kb on + strand, within GFF1617 at 401.015 kb on + strand, within GFF1617 at 401.015 kb on + strand, within GFF1617 at 401.015 kb on + strand, within GFF1617 at 401.015 kb on + strand, within GFF1617 at 401.015 kb on + strand, within GFF1617 at 401.015 kb on + strand, within GFF1617 at 401.015 kb on + strand, within GFF1617 at 401.016 kb on - strand, within GFF1617 at 401.016 kb on - strand, within GFF1617 at 401.016 kb on - strand, within GFF1617 at 401.016 kb on - strand, within GFF1617 at 401.016 kb on - strand, within GFF1617 at 401.114 kb on + strand, within GFF1617 at 401.430 kb on - strand at 401.508 kb on + strand at 401.508 kb on + strand at 401.508 kb on + strand at 401.508 kb on + strand at 401.508 kb on + strand at 401.509 kb on - strand at 401.509 kb on - strand at 401.509 kb on - strand at 401.697 kb on + strand, within GFF1618 at 401.739 kb on + strand, within GFF1618 at 401.769 kb on + strand, within GFF1618 at 401.769 kb on + strand, within GFF1618 at 401.770 kb on - strand, within GFF1618 at 401.770 kb on - strand, within GFF1618 at 401.770 kb on - strand, within GFF1618 at 401.890 kb on - strand, within GFF1618 at 401.902 kb on - strand, within GFF1618 at 401.926 kb on - strand, within GFF1618 at 401.943 kb on + strand, within GFF1618 at 401.943 kb on + strand, within GFF1618 at 401.943 kb on + strand, within GFF1618 at 401.944 kb on - strand, within GFF1618 at 401.944 kb on - strand, within GFF1618 at 401.947 kb on - strand, within GFF1618 at 401.947 kb on - strand, within GFF1618 at 401.997 kb on + strand, within GFF1618 at 401.997 kb on + strand, within GFF1618 at 401.998 kb on - strand, within GFF1618 at 402.066 kb on + strand, within GFF1618 at 402.066 kb on + strand, within GFF1618 at 402.067 kb on - strand, within GFF1618 at 402.277 kb on - strand, within GFF1618 at 402.362 kb on - strand at 402.368 kb on - strand at 402.368 kb on - strand at 402.368 kb on - strand at 402.368 kb on - strand at 402.368 kb on - strand at 402.368 kb on - strand at 402.398 kb on + strand at 402.399 kb on - strand at 402.399 kb on - strand at 402.401 kb on + strand at 402.401 kb on + strand at 402.402 kb on - strand at 402.438 kb on + strand at 402.481 kb on - strand at 402.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 399,617 + -1.2 399,618 - +0.3 399,659 + -1.1 399,746 - GFF1616 0.17 +0.6 399,746 - GFF1616 0.17 +0.3 399,746 - GFF1616 0.17 -0.1 399,746 - GFF1616 0.17 +0.8 399,875 + GFF1616 0.30 -0.7 399,876 - GFF1616 0.30 -0.8 400,042 + GFF1616 0.47 -0.1 400,042 + GFF1616 0.47 -0.4 400,043 - GFF1616 0.47 -1.0 400,097 + GFF1616 0.53 +1.2 400,097 + GFF1616 0.53 +0.3 400,097 + GFF1616 0.53 -0.2 400,098 - GFF1616 0.53 -0.6 400,098 - GFF1616 0.53 +0.5 400,111 - GFF1616 0.54 -1.2 400,203 + GFF1616 0.64 -0.0 400,367 + GFF1616 0.81 -0.3 400,367 + GFF1616 0.81 -0.7 400,367 + GFF1616 0.81 -0.1 400,367 + GFF1616 0.81 +0.1 400,367 + GFF1616 0.81 -0.4 400,368 - GFF1616 0.81 -0.0 400,368 - GFF1616 0.81 -0.0 400,443 - GFF1616 0.89 -1.3 400,616 + -0.6 400,789 + GFF1617 0.19 -0.0 401,015 + GFF1617 0.45 +1.1 401,015 + GFF1617 0.45 +0.1 401,015 + GFF1617 0.45 +0.4 401,015 + GFF1617 0.45 -0.8 401,015 + GFF1617 0.45 +0.3 401,015 + GFF1617 0.45 +0.7 401,015 + GFF1617 0.45 +0.6 401,016 - GFF1617 0.45 +1.0 401,016 - GFF1617 0.45 +0.2 401,016 - GFF1617 0.45 -0.5 401,016 - GFF1617 0.45 +0.8 401,016 - GFF1617 0.45 +1.4 401,114 + GFF1617 0.56 +0.2 401,430 - -0.2 401,508 + +0.9 401,508 + +0.9 401,508 + +1.2 401,508 + -0.3 401,508 + -0.8 401,509 - +0.5 401,509 - +0.3 401,509 - -0.0 401,697 + GFF1618 0.18 +1.2 401,739 + GFF1618 0.23 -0.5 401,769 + GFF1618 0.26 -0.7 401,769 + GFF1618 0.26 +0.2 401,770 - GFF1618 0.26 +0.9 401,770 - GFF1618 0.26 +0.1 401,770 - GFF1618 0.26 -1.6 401,890 - GFF1618 0.41 +0.6 401,902 - GFF1618 0.42 +0.6 401,926 - GFF1618 0.45 -1.4 401,943 + GFF1618 0.47 -0.0 401,943 + GFF1618 0.47 +0.1 401,943 + GFF1618 0.47 +0.5 401,944 - GFF1618 0.48 -0.8 401,944 - GFF1618 0.48 -0.4 401,947 - GFF1618 0.48 +0.3 401,947 - GFF1618 0.48 +0.9 401,997 + GFF1618 0.54 -0.2 401,997 + GFF1618 0.54 +0.4 401,998 - GFF1618 0.54 +0.3 402,066 + GFF1618 0.62 -1.6 402,066 + GFF1618 0.62 +0.5 402,067 - GFF1618 0.62 +0.0 402,277 - GFF1618 0.88 +0.2 402,362 - -0.2 402,368 - +0.2 402,368 - -0.1 402,368 - -0.2 402,368 - -0.0 402,368 - -0.2 402,368 - +0.1 402,398 + -0.4 402,399 - -0.4 402,399 - -0.1 402,401 + -0.3 402,401 + +0.9 402,402 - -0.0 402,438 + -0.1 402,481 - +0.2 402,481 - -2.1
Or see this region's nucleotide sequence