Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF145 and GFF146 are separated by 255 nucleotides GFF146 and GFF147 are separated by 123 nucleotides GFF147 and GFF148 are separated by 18 nucleotides GFF148 and GFF149 are separated by 44 nucleotides
GFF145 - hypothetical protein, at 170,640 to 171,377
GFF145
GFF146 - Protein ElaA, at 171,633 to 172,085
GFF146
GFF147 - hypothetical protein, at 172,209 to 172,505
GFF147
GFF148 - UTP pyrophosphatase, at 172,524 to 173,018
GFF148
GFF149 - Sensor histidine kinase RcsC, at 173,063 to 175,186
GFF149
Position (kb) 172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.273 kb on - strand, within GFF145 at 171.287 kb on + strand, within GFF145 at 171.288 kb on - strand, within GFF145 at 171.466 kb on + strand at 171.466 kb on + strand at 171.466 kb on + strand at 171.467 kb on - strand at 171.467 kb on - strand at 171.505 kb on + strand at 171.505 kb on + strand at 171.575 kb on + strand at 171.583 kb on + strand at 171.583 kb on + strand at 171.584 kb on - strand at 171.584 kb on - strand at 171.584 kb on - strand at 171.584 kb on - strand at 171.600 kb on + strand at 171.601 kb on - strand at 171.601 kb on - strand at 171.687 kb on + strand, within GFF146 at 171.687 kb on + strand, within GFF146 at 171.687 kb on + strand, within GFF146 at 171.687 kb on + strand, within GFF146 at 171.687 kb on + strand, within GFF146 at 171.688 kb on - strand, within GFF146 at 171.688 kb on - strand, within GFF146 at 171.688 kb on - strand, within GFF146 at 171.688 kb on - strand, within GFF146 at 171.715 kb on + strand, within GFF146 at 171.715 kb on + strand, within GFF146 at 171.715 kb on + strand, within GFF146 at 171.715 kb on + strand, within GFF146 at 171.716 kb on - strand, within GFF146 at 171.741 kb on + strand, within GFF146 at 171.819 kb on + strand, within GFF146 at 171.819 kb on + strand, within GFF146 at 171.819 kb on + strand, within GFF146 at 171.820 kb on - strand, within GFF146 at 171.820 kb on - strand, within GFF146 at 171.972 kb on + strand, within GFF146 at 171.972 kb on + strand, within GFF146 at 171.973 kb on - strand, within GFF146 at 171.973 kb on - strand, within GFF146 at 171.973 kb on - strand, within GFF146 at 172.002 kb on + strand, within GFF146 at 172.003 kb on - strand, within GFF146 at 172.006 kb on - strand, within GFF146 at 172.006 kb on - strand, within GFF146 at 172.014 kb on + strand, within GFF146 at 172.014 kb on + strand, within GFF146 at 172.015 kb on - strand, within GFF146 at 172.015 kb on - strand, within GFF146 at 172.041 kb on + strand at 172.042 kb on - strand at 172.042 kb on - strand at 172.066 kb on + strand at 172.066 kb on + strand at 172.066 kb on + strand at 172.066 kb on + strand at 172.067 kb on - strand at 172.067 kb on - strand at 172.067 kb on - strand at 172.067 kb on - strand at 172.067 kb on - strand at 172.067 kb on - strand at 172.233 kb on + strand at 172.453 kb on + strand, within GFF147 at 172.454 kb on - strand, within GFF147 at 172.462 kb on + strand, within GFF147 at 172.474 kb on + strand, within GFF147 at 172.475 kb on - strand, within GFF147 at 172.552 kb on + strand at 172.553 kb on - strand at 172.610 kb on + strand, within GFF148 at 172.610 kb on + strand, within GFF148 at 172.610 kb on + strand, within GFF148 at 172.611 kb on - strand, within GFF148 at 172.613 kb on - strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.846 kb on + strand, within GFF148 at 172.847 kb on - strand, within GFF148 at 172.847 kb on - strand, within GFF148 at 172.847 kb on - strand, within GFF148 at 172.847 kb on - strand, within GFF148 at 172.870 kb on + strand, within GFF148 at 172.870 kb on + strand, within GFF148 at 172.871 kb on - strand, within GFF148 at 172.871 kb on - strand, within GFF148 at 172.871 kb on - strand, within GFF148 at 172.871 kb on - strand, within GFF148 at 172.876 kb on + strand, within GFF148 at 172.876 kb on + strand, within GFF148 at 172.876 kb on + strand, within GFF148 at 172.877 kb on - strand, within GFF148 at 172.915 kb on + strand, within GFF148 at 172.930 kb on + strand, within GFF148 at 172.930 kb on + strand, within GFF148 at 172.931 kb on - strand, within GFF148 at 172.931 kb on - strand, within GFF148 at 173.003 kb on - strand at 173.003 kb on - strand at 173.003 kb on - strand at 173.003 kb on - strand at 173.055 kb on + strand at 173.154 kb on + strand at 173.154 kb on + strand at 173.155 kb on - strand at 173.155 kb on - strand at 173.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 171,273 - GFF145 0.86 -0.4 171,287 + GFF145 0.88 -0.9 171,288 - GFF145 0.88 -1.5 171,466 + -0.6 171,466 + +0.7 171,466 + -0.5 171,467 - +0.1 171,467 - +0.1 171,505 + +1.0 171,505 + -0.6 171,575 + -0.3 171,583 + +1.5 171,583 + -0.5 171,584 - +0.7 171,584 - -0.1 171,584 - -0.1 171,584 - +0.7 171,600 + +1.0 171,601 - +1.2 171,601 - -0.8 171,687 + GFF146 0.12 -1.2 171,687 + GFF146 0.12 +0.3 171,687 + GFF146 0.12 +0.4 171,687 + GFF146 0.12 +0.1 171,687 + GFF146 0.12 -1.8 171,688 - GFF146 0.12 -0.3 171,688 - GFF146 0.12 +0.3 171,688 - GFF146 0.12 +0.8 171,688 - GFF146 0.12 -0.9 171,715 + GFF146 0.18 +0.9 171,715 + GFF146 0.18 +0.2 171,715 + GFF146 0.18 +0.3 171,715 + GFF146 0.18 -0.1 171,716 - GFF146 0.18 -0.6 171,741 + GFF146 0.24 -0.1 171,819 + GFF146 0.41 +0.4 171,819 + GFF146 0.41 -0.0 171,819 + GFF146 0.41 -0.8 171,820 - GFF146 0.41 +0.7 171,820 - GFF146 0.41 -0.3 171,972 + GFF146 0.75 -0.1 171,972 + GFF146 0.75 +0.6 171,973 - GFF146 0.75 +0.3 171,973 - GFF146 0.75 -0.9 171,973 - GFF146 0.75 +0.0 172,002 + GFF146 0.81 +0.4 172,003 - GFF146 0.82 -0.5 172,006 - GFF146 0.82 +0.4 172,006 - GFF146 0.82 -0.4 172,014 + GFF146 0.84 +0.1 172,014 + GFF146 0.84 +0.1 172,015 - GFF146 0.84 -0.6 172,015 - GFF146 0.84 +1.3 172,041 + +0.4 172,042 - -0.5 172,042 - -1.3 172,066 + +0.1 172,066 + -0.1 172,066 + +0.9 172,066 + +0.4 172,067 - -2.3 172,067 - +0.2 172,067 - -1.2 172,067 - -0.9 172,067 - +0.5 172,067 - +0.5 172,233 + +0.6 172,453 + GFF147 0.82 +0.5 172,454 - GFF147 0.82 +0.6 172,462 + GFF147 0.85 +0.1 172,474 + GFF147 0.89 -0.1 172,475 - GFF147 0.90 +0.6 172,552 + -0.8 172,553 - -0.9 172,610 + GFF148 0.17 +0.4 172,610 + GFF148 0.17 -1.2 172,610 + GFF148 0.17 +1.5 172,611 - GFF148 0.18 +0.2 172,613 - GFF148 0.18 -0.2 172,846 + GFF148 0.65 +0.2 172,846 + GFF148 0.65 -0.5 172,846 + GFF148 0.65 -0.5 172,846 + GFF148 0.65 +0.2 172,846 + GFF148 0.65 +0.3 172,846 + GFF148 0.65 -0.8 172,846 + GFF148 0.65 -1.8 172,846 + GFF148 0.65 -0.3 172,846 + GFF148 0.65 -0.1 172,847 - GFF148 0.65 -1.1 172,847 - GFF148 0.65 -0.5 172,847 - GFF148 0.65 +1.1 172,847 - GFF148 0.65 -0.8 172,870 + GFF148 0.70 -0.5 172,870 + GFF148 0.70 +0.5 172,871 - GFF148 0.70 -0.4 172,871 - GFF148 0.70 -1.5 172,871 - GFF148 0.70 -1.2 172,871 - GFF148 0.70 -0.3 172,876 + GFF148 0.71 -0.3 172,876 + GFF148 0.71 +0.0 172,876 + GFF148 0.71 +1.9 172,877 - GFF148 0.71 -0.8 172,915 + GFF148 0.79 -0.3 172,930 + GFF148 0.82 +0.6 172,930 + GFF148 0.82 +0.6 172,931 - GFF148 0.82 +0.4 172,931 - GFF148 0.82 +1.1 173,003 - +0.4 173,003 - -1.1 173,003 - -0.9 173,003 - +0.6 173,055 + -0.4 173,154 + -0.0 173,154 + +0.5 173,155 - +0.1 173,155 - -0.4 173,184 + +0.5
Or see this region's nucleotide sequence