Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1456 and GFF1457 are separated by 125 nucleotides GFF1457 and GFF1458 are separated by 271 nucleotides
GFF1456 - HTH-type transcriptional regulator CysL, at 227,263 to 228,129
GFF1456
GFF1457 - HTH-type transcriptional activator CmpR, at 228,255 to 229,127
GFF1457
GFF1458 - Phosphoglycerate transporter protein, at 229,399 to 230,724
GFF1458
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1 at 227.389 kb on + strand, within GFF1456 at 227.389 kb on + strand, within GFF1456 at 227.390 kb on - strand, within GFF1456 at 227.390 kb on - strand, within GFF1456 at 227.526 kb on - strand, within GFF1456 at 227.880 kb on + strand, within GFF1456 at 227.880 kb on + strand, within GFF1456 at 227.881 kb on - strand, within GFF1456 at 227.881 kb on - strand, within GFF1456 at 227.881 kb on - strand, within GFF1456 at 227.881 kb on - strand, within GFF1456 at 228.278 kb on + strand at 228.279 kb on - strand at 228.715 kb on + strand, within GFF1457 at 228.715 kb on + strand, within GFF1457 at 228.715 kb on + strand, within GFF1457 at 228.957 kb on + strand, within GFF1457 at 228.958 kb on - strand, within GFF1457 at 228.968 kb on + strand, within GFF1457 at 228.968 kb on + strand, within GFF1457 at 229.015 kb on - strand, within GFF1457 at 229.045 kb on + strand at 229.045 kb on + strand at 229.140 kb on - strand at 229.181 kb on - strand at 229.185 kb on - strand at 229.194 kb on + strand at 229.450 kb on - strand at 229.452 kb on + strand at 229.452 kb on + strand at 229.477 kb on + strand at 229.577 kb on - strand, within GFF1458 at 229.577 kb on - strand, within GFF1458 at 229.577 kb on - strand, within GFF1458 at 229.577 kb on - strand, within GFF1458 at 229.577 kb on - strand, within GFF1458 at 229.588 kb on + strand, within GFF1458 at 229.589 kb on - strand, within GFF1458 at 229.589 kb on - strand, within GFF1458 at 229.589 kb on - strand, within GFF1458 at 229.704 kb on + strand, within GFF1458 at 229.704 kb on + strand, within GFF1458 at 229.705 kb on - strand, within GFF1458 at 229.777 kb on - strand, within GFF1458 at 229.844 kb on - strand, within GFF1458 at 229.892 kb on - strand, within GFF1458 at 229.968 kb on + strand, within GFF1458 at 229.969 kb on - strand, within GFF1458
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 227,389 + GFF1456 0.15 +0.0 227,389 + GFF1456 0.15 -1.7 227,390 - GFF1456 0.15 -0.2 227,390 - GFF1456 0.15 +0.5 227,526 - GFF1456 0.30 +0.6 227,880 + GFF1456 0.71 -0.3 227,880 + GFF1456 0.71 -1.3 227,881 - GFF1456 0.71 +1.3 227,881 - GFF1456 0.71 +0.1 227,881 - GFF1456 0.71 +0.3 227,881 - GFF1456 0.71 -0.0 228,278 + -2.1 228,279 - +0.8 228,715 + GFF1457 0.53 -0.8 228,715 + GFF1457 0.53 -0.3 228,715 + GFF1457 0.53 +1.4 228,957 + GFF1457 0.80 +0.4 228,958 - GFF1457 0.81 +0.7 228,968 + GFF1457 0.82 +1.3 228,968 + GFF1457 0.82 -0.2 229,015 - GFF1457 0.87 -1.1 229,045 + -0.7 229,045 + +0.6 229,140 - -0.3 229,181 - +1.5 229,185 - -0.6 229,194 + -0.7 229,450 - +0.9 229,452 + -1.3 229,452 + -0.4 229,477 + -1.2 229,577 - GFF1458 0.13 -0.1 229,577 - GFF1458 0.13 -1.6 229,577 - GFF1458 0.13 +0.2 229,577 - GFF1458 0.13 +0.9 229,577 - GFF1458 0.13 +1.1 229,588 + GFF1458 0.14 -0.6 229,589 - GFF1458 0.14 -0.4 229,589 - GFF1458 0.14 -1.2 229,589 - GFF1458 0.14 +1.0 229,704 + GFF1458 0.23 +0.3 229,704 + GFF1458 0.23 +0.2 229,705 - GFF1458 0.23 +0.5 229,777 - GFF1458 0.29 +0.2 229,844 - GFF1458 0.34 -0.7 229,892 - GFF1458 0.37 +1.0 229,968 + GFF1458 0.43 -1.0 229,969 - GFF1458 0.43 -0.8
Or see this region's nucleotide sequence