Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1452 and GFF1453 are separated by 256 nucleotides GFF1453 and GFF1454 are separated by 82 nucleotides
GFF1452 - 1-aminocyclopropane-1-carboxylate deaminase, at 223,098 to 224,021
GFF1452
GFF1453 - hypothetical protein, at 224,278 to 224,988
GFF1453
GFF1454 - Phosphonoacetaldehyde hydrolase, at 225,071 to 225,898
GFF1454
Position (kb) 224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 223.701 kb on + strand, within GFF1452 at 223.701 kb on + strand, within GFF1452 at 223.701 kb on + strand, within GFF1452 at 223.701 kb on + strand, within GFF1452 at 223.702 kb on - strand, within GFF1452 at 223.702 kb on - strand, within GFF1452 at 223.702 kb on - strand, within GFF1452 at 223.702 kb on - strand, within GFF1452 at 223.702 kb on - strand, within GFF1452 at 223.788 kb on + strand, within GFF1452 at 223.788 kb on + strand, within GFF1452 at 223.896 kb on + strand, within GFF1452 at 223.896 kb on + strand, within GFF1452 at 223.897 kb on - strand, within GFF1452 at 223.897 kb on - strand, within GFF1452 at 224.039 kb on + strand at 224.039 kb on + strand at 224.039 kb on + strand at 224.040 kb on - strand at 224.040 kb on - strand at 224.040 kb on - strand at 224.040 kb on - strand at 224.040 kb on - strand at 224.040 kb on - strand at 224.040 kb on - strand at 224.065 kb on - strand at 224.164 kb on + strand at 224.311 kb on - strand at 224.385 kb on - strand, within GFF1453 at 224.665 kb on - strand, within GFF1453 at 224.812 kb on + strand, within GFF1453 at 224.865 kb on + strand, within GFF1453 at 224.889 kb on + strand, within GFF1453 at 224.890 kb on - strand, within GFF1453 at 224.890 kb on - strand, within GFF1453 at 224.957 kb on - strand at 224.971 kb on - strand at 224.971 kb on - strand at 224.971 kb on - strand at 224.976 kb on + strand at 224.977 kb on - strand at 225.010 kb on + strand at 225.011 kb on - strand at 225.159 kb on + strand, within GFF1454 at 225.159 kb on + strand, within GFF1454 at 225.159 kb on + strand, within GFF1454 at 225.160 kb on - strand, within GFF1454 at 225.160 kb on - strand, within GFF1454 at 225.160 kb on - strand, within GFF1454 at 225.160 kb on - strand, within GFF1454 at 225.246 kb on + strand, within GFF1454 at 225.247 kb on - strand, within GFF1454 at 225.247 kb on - strand, within GFF1454 at 225.247 kb on - strand, within GFF1454 at 225.247 kb on - strand, within GFF1454 at 225.456 kb on + strand, within GFF1454 at 225.456 kb on + strand, within GFF1454 at 225.630 kb on + strand, within GFF1454 at 225.630 kb on + strand, within GFF1454 at 225.630 kb on + strand, within GFF1454 at 225.630 kb on + strand, within GFF1454 at 225.630 kb on + strand, within GFF1454 at 225.630 kb on + strand, within GFF1454 at 225.631 kb on - strand, within GFF1454 at 225.631 kb on - strand, within GFF1454 at 225.631 kb on - strand, within GFF1454 at 225.631 kb on - strand, within GFF1454 at 225.631 kb on - strand, within GFF1454 at 225.634 kb on + strand, within GFF1454 at 225.891 kb on + strand at 225.892 kb on - strand at 225.921 kb on - strand at 225.921 kb on - strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.975 kb on + strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand at 225.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 223,701 + GFF1452 0.65 -0.2 223,701 + GFF1452 0.65 -0.2 223,701 + GFF1452 0.65 -1.0 223,701 + GFF1452 0.65 -1.9 223,702 - GFF1452 0.65 +0.3 223,702 - GFF1452 0.65 +0.0 223,702 - GFF1452 0.65 -0.2 223,702 - GFF1452 0.65 -0.2 223,702 - GFF1452 0.65 -0.6 223,788 + GFF1452 0.75 -0.6 223,788 + GFF1452 0.75 -2.3 223,896 + GFF1452 0.86 +0.3 223,896 + GFF1452 0.86 -0.2 223,897 - GFF1452 0.86 -0.7 223,897 - GFF1452 0.86 +0.1 224,039 + -0.1 224,039 + +1.8 224,039 + +0.9 224,040 - -0.2 224,040 - +0.2 224,040 - -0.1 224,040 - -0.0 224,040 - -0.6 224,040 - +0.1 224,040 - -0.0 224,065 - +0.8 224,164 + +0.5 224,311 - -0.3 224,385 - GFF1453 0.15 -0.7 224,665 - GFF1453 0.54 +0.7 224,812 + GFF1453 0.75 +0.3 224,865 + GFF1453 0.83 +0.3 224,889 + GFF1453 0.86 +0.3 224,890 - GFF1453 0.86 +1.0 224,890 - GFF1453 0.86 +0.3 224,957 - -0.5 224,971 - -0.6 224,971 - +0.1 224,971 - +0.2 224,976 + -0.1 224,977 - -0.5 225,010 + -0.5 225,011 - +0.7 225,159 + GFF1454 0.11 -0.2 225,159 + GFF1454 0.11 +0.3 225,159 + GFF1454 0.11 +0.4 225,160 - GFF1454 0.11 +0.5 225,160 - GFF1454 0.11 +0.1 225,160 - GFF1454 0.11 +0.8 225,160 - GFF1454 0.11 -0.5 225,246 + GFF1454 0.21 -0.6 225,247 - GFF1454 0.21 +0.9 225,247 - GFF1454 0.21 -0.0 225,247 - GFF1454 0.21 -0.1 225,247 - GFF1454 0.21 -1.0 225,456 + GFF1454 0.46 +0.2 225,456 + GFF1454 0.46 -0.6 225,630 + GFF1454 0.68 -0.3 225,630 + GFF1454 0.68 +0.7 225,630 + GFF1454 0.68 +0.7 225,630 + GFF1454 0.68 +1.3 225,630 + GFF1454 0.68 +0.3 225,630 + GFF1454 0.68 +0.1 225,631 - GFF1454 0.68 -0.2 225,631 - GFF1454 0.68 +0.0 225,631 - GFF1454 0.68 -0.5 225,631 - GFF1454 0.68 -0.5 225,631 - GFF1454 0.68 +0.1 225,634 + GFF1454 0.68 +0.2 225,891 + +1.3 225,892 - +0.6 225,921 - -0.6 225,921 - +0.0 225,975 + -0.7 225,975 + -0.3 225,975 + -0.1 225,975 + -0.2 225,975 + +0.5 225,975 + +0.6 225,975 + -1.3 225,975 + +0.1 225,975 + -0.4 225,975 + -0.6 225,975 + -1.7 225,975 + +0.7 225,975 + -0.2 225,975 + -1.1 225,975 + -0.1 225,975 + +0.6 225,975 + +0.5 225,975 + -0.7 225,975 + -0.4 225,975 + +0.4 225,975 + +1.3 225,975 + -0.9 225,975 + +0.1 225,975 + -1.0 225,975 + +0.7 225,975 + +0.1 225,976 - -0.8 225,976 - -0.0 225,976 - -0.9 225,976 - +0.5 225,976 - -0.1 225,976 - +0.3 225,976 - +0.1 225,976 - +0.1 225,976 - -2.2 225,976 - -0.2 225,976 - +0.5 225,976 - -0.8 225,976 - -1.6 225,976 - -0.7 225,976 - -0.4 225,976 - +0.1
Or see this region's nucleotide sequence