Strain Fitness in Pseudomonas sp. DMC3 around GFF1388

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1387 and GFF1388 are separated by 255 nucleotidesGFF1388 and GFF1389 are separated by 122 nucleotides GFF1387 - Disulfide-bond oxidoreductase YfcG, at 151,720 to 152,418 GFF1387 GFF1388 - Delta-aminolevulinic acid dehydratase, at 152,674 to 153,648 GFF1388 GFF1389 - Ferrichrome receptor FcuA, at 153,771 to 155,975 GFF1389 Position (kb) 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 151.679 kb on + strandat 151.679 kb on + strandat 151.679 kb on + strandat 151.684 kb on + strandat 151.685 kb on - strandat 151.965 kb on + strand, within GFF1387at 151.966 kb on - strand, within GFF1387at 152.005 kb on + strand, within GFF1387at 152.005 kb on + strand, within GFF1387at 152.005 kb on + strand, within GFF1387at 152.150 kb on - strand, within GFF1387at 152.176 kb on + strand, within GFF1387at 152.176 kb on + strand, within GFF1387at 152.177 kb on - strand, within GFF1387at 152.207 kb on + strand, within GFF1387at 152.208 kb on - strand, within GFF1387at 152.255 kb on - strand, within GFF1387at 152.255 kb on - strand, within GFF1387at 152.308 kb on + strand, within GFF1387at 152.309 kb on - strand, within GFF1387at 152.309 kb on - strand, within GFF1387at 152.309 kb on - strand, within GFF1387at 152.429 kb on + strandat 152.429 kb on + strandat 152.429 kb on + strandat 152.429 kb on + strandat 152.429 kb on + strandat 152.430 kb on - strandat 152.430 kb on - strandat 152.430 kb on - strandat 152.430 kb on - strandat 152.545 kb on + strandat 152.545 kb on + strandat 152.545 kb on + strandat 152.557 kb on + strandat 152.560 kb on + strandat 152.560 kb on + strandat 152.561 kb on - strandat 152.561 kb on - strandat 152.561 kb on - strandat 152.620 kb on + strandat 152.621 kb on - strandat 152.621 kb on - strandat 152.621 kb on - strandat 152.621 kb on - strandat 152.621 kb on - strandat 152.621 kb on - strandat 152.882 kb on - strand, within GFF1388at 153.050 kb on - strand, within GFF1388at 153.253 kb on + strand, within GFF1388at 153.280 kb on + strand, within GFF1388at 153.281 kb on - strand, within GFF1388at 153.334 kb on + strand, within GFF1388at 153.334 kb on + strand, within GFF1388at 153.433 kb on + strand, within GFF1388at 153.433 kb on + strand, within GFF1388at 153.505 kb on + strand, within GFF1388at 153.614 kb on - strandat 153.614 kb on - strandat 153.646 kb on + strandat 153.646 kb on + strandat 153.646 kb on + strandat 153.661 kb on - strandat 153.661 kb on - strandat 153.772 kb on + strandat 153.772 kb on + strandat 153.773 kb on - strandat 153.773 kb on - strandat 153.827 kb on - strandat 153.982 kb on + strandat 154.234 kb on + strand, within GFF1389at 154.234 kb on + strand, within GFF1389at 154.234 kb on + strand, within GFF1389at 154.234 kb on + strand, within GFF1389at 154.234 kb on + strand, within GFF1389at 154.234 kb on + strand, within GFF1389at 154.499 kb on - strand, within GFF1389at 154.553 kb on - strand, within GFF1389at 154.553 kb on - strand, within GFF1389at 154.561 kb on + strand, within GFF1389at 154.561 kb on + strand, within GFF1389at 154.562 kb on - strand, within GFF1389at 154.562 kb on - strand, within GFF1389at 154.562 kb on - strand, within GFF1389at 154.568 kb on - strand, within GFF1389at 154.568 kb on - strand, within GFF1389at 154.568 kb on - strand, within GFF1389

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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151,679 + -1.4
151,679 + +0.6
151,679 + +0.7
151,684 + -1.2
151,685 - -0.5
151,965 + GFF1387 0.35 -1.6
151,966 - GFF1387 0.35 +0.6
152,005 + GFF1387 0.41 -1.1
152,005 + GFF1387 0.41 +0.3
152,005 + GFF1387 0.41 +0.7
152,150 - GFF1387 0.62 -0.7
152,176 + GFF1387 0.65 +0.6
152,176 + GFF1387 0.65 -0.8
152,177 - GFF1387 0.65 -0.6
152,207 + GFF1387 0.70 -0.8
152,208 - GFF1387 0.70 +1.0
152,255 - GFF1387 0.77 -0.7
152,255 - GFF1387 0.77 +1.3
152,308 + GFF1387 0.84 +0.3
152,309 - GFF1387 0.84 -1.1
152,309 - GFF1387 0.84 -1.3
152,309 - GFF1387 0.84 +0.8
152,429 + +0.1
152,429 + +0.3
152,429 + +0.4
152,429 + -0.5
152,429 + +0.3
152,430 - +0.9
152,430 - -0.1
152,430 - +1.0
152,430 - +0.1
152,545 + -0.4
152,545 + -0.5
152,545 + -0.6
152,557 + -0.7
152,560 + +0.1
152,560 + +0.5
152,561 - +0.2
152,561 - +0.7
152,561 - +0.1
152,620 + +0.5
152,621 - -0.3
152,621 - +0.3
152,621 - -2.9
152,621 - -0.6
152,621 - -0.1
152,621 - +0.4
152,882 - GFF1388 0.21 -0.6
153,050 - GFF1388 0.39 -0.4
153,253 + GFF1388 0.59 -0.6
153,280 + GFF1388 0.62 +0.7
153,281 - GFF1388 0.62 +0.8
153,334 + GFF1388 0.68 +2.1
153,334 + GFF1388 0.68 +0.3
153,433 + GFF1388 0.78 -0.5
153,433 + GFF1388 0.78 -0.6
153,505 + GFF1388 0.85 +2.3
153,614 - -1.2
153,614 - -0.4
153,646 + -0.7
153,646 + +0.6
153,646 + +0.6
153,661 - -1.2
153,661 - -0.2
153,772 + +0.1
153,772 + -0.4
153,773 - -1.7
153,773 - -1.0
153,827 - -0.3
153,982 + -0.4
154,234 + GFF1389 0.21 -0.6
154,234 + GFF1389 0.21 +1.4
154,234 + GFF1389 0.21 -0.4
154,234 + GFF1389 0.21 -0.2
154,234 + GFF1389 0.21 -0.1
154,234 + GFF1389 0.21 -0.5
154,499 - GFF1389 0.33 -0.6
154,553 - GFF1389 0.35 -0.2
154,553 - GFF1389 0.35 -1.6
154,561 + GFF1389 0.36 +1.3
154,561 + GFF1389 0.36 +1.8
154,562 - GFF1389 0.36 -1.2
154,562 - GFF1389 0.36 -0.8
154,562 - GFF1389 0.36 +0.8
154,568 - GFF1389 0.36 -0.1
154,568 - GFF1389 0.36 +0.3
154,568 - GFF1389 0.36 -0.5

Or see this region's nucleotide sequence