Strain Fitness in Pseudomonas sp. DMC3 around GFF1359

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1358 and GFF1359 are separated by 128 nucleotidesGFF1359 and GFF1360 are separated by 14 nucleotides GFF1358 - Diaminopimelate epimerase, at 119,056 to 120,036 GFF1358 GFF1359 - Cytosine deaminase, at 120,165 to 121,400 GFF1359 GFF1360 - Cytosine permease, at 121,415 to 122,686 GFF1360 Position (kb) 120 121 122Strain fitness (log2 ratio) -2 -1 0 1 2at 119.654 kb on + strand, within GFF1358at 119.741 kb on - strand, within GFF1358at 119.741 kb on - strand, within GFF1358at 120.227 kb on - strandat 120.316 kb on + strand, within GFF1359at 120.457 kb on + strand, within GFF1359at 120.647 kb on - strand, within GFF1359at 120.658 kb on + strand, within GFF1359at 120.659 kb on - strand, within GFF1359at 120.853 kb on + strand, within GFF1359at 120.853 kb on + strand, within GFF1359at 121.071 kb on - strand, within GFF1359at 121.178 kb on + strand, within GFF1359at 121.178 kb on + strand, within GFF1359at 121.178 kb on + strand, within GFF1359at 121.179 kb on - strand, within GFF1359at 121.418 kb on + strandat 121.419 kb on - strandat 121.419 kb on - strandat 121.419 kb on - strandat 121.427 kb on + strandat 121.427 kb on + strandat 121.427 kb on + strandat 121.428 kb on - strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.476 kb on + strandat 121.477 kb on - strandat 121.477 kb on - strandat 121.477 kb on - strandat 121.477 kb on - strandat 121.477 kb on - strandat 121.477 kb on - strandat 121.477 kb on - strandat 121.477 kb on - strandat 121.477 kb on - strandat 121.503 kb on - strandat 121.629 kb on + strand, within GFF1360at 121.629 kb on + strand, within GFF1360at 121.629 kb on + strand, within GFF1360at 121.630 kb on - strand, within GFF1360at 121.630 kb on - strand, within GFF1360at 121.710 kb on + strand, within GFF1360at 121.710 kb on + strand, within GFF1360at 121.710 kb on + strand, within GFF1360at 121.710 kb on + strand, within GFF1360at 121.711 kb on - strand, within GFF1360at 121.711 kb on - strand, within GFF1360at 121.711 kb on - strand, within GFF1360at 121.711 kb on - strand, within GFF1360at 121.815 kb on + strand, within GFF1360at 121.815 kb on + strand, within GFF1360at 121.816 kb on - strand, within GFF1360at 121.816 kb on - strand, within GFF1360at 121.816 kb on - strand, within GFF1360at 121.920 kb on + strand, within GFF1360at 121.921 kb on - strand, within GFF1360at 122.205 kb on + strand, within GFF1360at 122.206 kb on - strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.234 kb on + strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.235 kb on - strand, within GFF1360at 122.239 kb on - strand, within GFF1360at 122.239 kb on - strand, within GFF1360at 122.239 kb on - strand, within GFF1360at 122.239 kb on - strand, within GFF1360at 122.239 kb on - strand, within GFF1360at 122.310 kb on + strand, within GFF1360at 122.310 kb on + strand, within GFF1360at 122.310 kb on + strand, within GFF1360at 122.311 kb on - strand, within GFF1360at 122.311 kb on - strand, within GFF1360at 122.352 kb on + strand, within GFF1360at 122.353 kb on - strand, within GFF1360

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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119,654 + GFF1358 0.61 -0.5
119,741 - GFF1358 0.70 +0.8
119,741 - GFF1358 0.70 +0.7
120,227 - -0.4
120,316 + GFF1359 0.12 +0.7
120,457 + GFF1359 0.24 -0.4
120,647 - GFF1359 0.39 +0.7
120,658 + GFF1359 0.40 +1.0
120,659 - GFF1359 0.40 +1.1
120,853 + GFF1359 0.56 +0.5
120,853 + GFF1359 0.56 -1.3
121,071 - GFF1359 0.73 +0.1
121,178 + GFF1359 0.82 +1.1
121,178 + GFF1359 0.82 -0.2
121,178 + GFF1359 0.82 +0.5
121,179 - GFF1359 0.82 +0.5
121,418 + -0.5
121,419 - -0.3
121,419 - -0.1
121,419 - +1.3
121,427 + -0.3
121,427 + -0.4
121,427 + -0.1
121,428 - +1.2
121,476 + -0.2
121,476 + -0.5
121,476 + -0.9
121,476 + -0.4
121,476 + -0.1
121,476 + +0.6
121,476 + +0.6
121,476 + +0.1
121,476 + -0.5
121,476 + -0.0
121,477 - +0.3
121,477 - -0.9
121,477 - +0.3
121,477 - -0.9
121,477 - +0.1
121,477 - +0.6
121,477 - +0.4
121,477 - +0.1
121,477 - +0.3
121,503 - +1.3
121,629 + GFF1360 0.17 -0.0
121,629 + GFF1360 0.17 +0.6
121,629 + GFF1360 0.17 +0.6
121,630 - GFF1360 0.17 +0.1
121,630 - GFF1360 0.17 -1.0
121,710 + GFF1360 0.23 -1.2
121,710 + GFF1360 0.23 +0.1
121,710 + GFF1360 0.23 +0.1
121,710 + GFF1360 0.23 +0.9
121,711 - GFF1360 0.23 +0.6
121,711 - GFF1360 0.23 +0.2
121,711 - GFF1360 0.23 +0.5
121,711 - GFF1360 0.23 +0.4
121,815 + GFF1360 0.31 -0.9
121,815 + GFF1360 0.31 -0.3
121,816 - GFF1360 0.32 -0.5
121,816 - GFF1360 0.32 +1.0
121,816 - GFF1360 0.32 +0.3
121,920 + GFF1360 0.40 -0.5
121,921 - GFF1360 0.40 -0.5
122,205 + GFF1360 0.62 -0.7
122,206 - GFF1360 0.62 -0.7
122,234 + GFF1360 0.64 +0.6
122,234 + GFF1360 0.64 -1.3
122,234 + GFF1360 0.64 +0.5
122,234 + GFF1360 0.64 +0.6
122,234 + GFF1360 0.64 +0.6
122,234 + GFF1360 0.64 +1.2
122,234 + GFF1360 0.64 -1.9
122,234 + GFF1360 0.64 +1.8
122,234 + GFF1360 0.64 -1.3
122,234 + GFF1360 0.64 +0.1
122,234 + GFF1360 0.64 -0.9
122,234 + GFF1360 0.64 -0.0
122,234 + GFF1360 0.64 +0.2
122,234 + GFF1360 0.64 +0.4
122,234 + GFF1360 0.64 -0.5
122,234 + GFF1360 0.64 +0.2
122,234 + GFF1360 0.64 -2.6
122,234 + GFF1360 0.64 +1.1
122,234 + GFF1360 0.64 +0.3
122,234 + GFF1360 0.64 -0.1
122,234 + GFF1360 0.64 +0.4
122,235 - GFF1360 0.64 -0.8
122,235 - GFF1360 0.64 -1.3
122,235 - GFF1360 0.64 +0.1
122,235 - GFF1360 0.64 -1.6
122,235 - GFF1360 0.64 -0.7
122,235 - GFF1360 0.64 +0.3
122,235 - GFF1360 0.64 -0.3
122,235 - GFF1360 0.64 -0.4
122,235 - GFF1360 0.64 -1.2
122,235 - GFF1360 0.64 -0.2
122,235 - GFF1360 0.64 -0.7
122,235 - GFF1360 0.64 -0.3
122,235 - GFF1360 0.64 -0.8
122,235 - GFF1360 0.64 +1.1
122,235 - GFF1360 0.64 -0.1
122,235 - GFF1360 0.64 -1.0
122,239 - GFF1360 0.65 -0.3
122,239 - GFF1360 0.65 -0.1
122,239 - GFF1360 0.65 +0.9
122,239 - GFF1360 0.65 +0.8
122,239 - GFF1360 0.65 +1.6
122,310 + GFF1360 0.70 -2.0
122,310 + GFF1360 0.70 +0.4
122,310 + GFF1360 0.70 -0.4
122,311 - GFF1360 0.70 +0.2
122,311 - GFF1360 0.70 -0.6
122,352 + GFF1360 0.74 +0.5
122,353 - GFF1360 0.74 -1.2

Or see this region's nucleotide sequence