Strain Fitness in Pseudomonas sp. DMC3 around GFF1234

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1233 and GFF1234 are separated by 82 nucleotidesGFF1234 and GFF1235 are separated by 49 nucleotidesGFF1235 and GFF1236 overlap by 4 nucleotides GFF1233 - HTH-type transcriptional regulator PerR, at 587,444 to 588,361 GFF1233 GFF1234 - hypothetical protein, at 588,444 to 588,668 GFF1234 GFF1235 - hypothetical protein, at 588,718 to 589,248 GFF1235 GFF1236 - hypothetical protein, at 589,245 to 589,490 GFF1236 Position (kb) 588 589Strain fitness (log2 ratio) -2 -1 0 1 2at 587.616 kb on + strand, within GFF1233at 587.617 kb on - strand, within GFF1233at 587.666 kb on + strand, within GFF1233at 587.667 kb on - strand, within GFF1233at 587.852 kb on + strand, within GFF1233at 587.852 kb on + strand, within GFF1233at 587.924 kb on + strand, within GFF1233at 587.924 kb on + strand, within GFF1233at 588.107 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.131 kb on + strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.132 kb on - strand, within GFF1233at 588.200 kb on + strand, within GFF1233at 588.201 kb on - strand, within GFF1233at 588.228 kb on + strand, within GFF1233at 588.228 kb on + strand, within GFF1233at 588.229 kb on - strand, within GFF1233at 588.229 kb on - strand, within GFF1233at 588.357 kb on - strandat 588.450 kb on - strandat 588.453 kb on + strandat 588.453 kb on + strandat 588.453 kb on + strandat 588.454 kb on - strandat 588.454 kb on - strandat 588.454 kb on - strandat 588.454 kb on - strandat 588.454 kb on - strandat 588.454 kb on - strandat 588.454 kb on - strandat 588.454 kb on - strandat 588.454 kb on - strandat 588.464 kb on + strandat 588.561 kb on + strand, within GFF1234at 588.562 kb on - strand, within GFF1234at 588.562 kb on - strand, within GFF1234at 588.597 kb on - strand, within GFF1234at 588.717 kb on + strandat 588.717 kb on + strandat 588.718 kb on - strandat 588.718 kb on - strandat 588.860 kb on + strand, within GFF1235at 588.860 kb on + strand, within GFF1235at 588.860 kb on + strand, within GFF1235at 588.860 kb on + strand, within GFF1235at 588.861 kb on - strand, within GFF1235at 588.861 kb on - strand, within GFF1235at 588.999 kb on + strand, within GFF1235at 589.000 kb on - strand, within GFF1235at 589.129 kb on + strand, within GFF1235at 589.130 kb on - strand, within GFF1235at 589.130 kb on - strand, within GFF1235at 589.130 kb on - strand, within GFF1235at 589.174 kb on + strand, within GFF1235at 589.174 kb on + strand, within GFF1235at 589.175 kb on - strand, within GFF1235at 589.177 kb on - strand, within GFF1235at 589.177 kb on - strand, within GFF1235at 589.433 kb on + strand, within GFF1236at 589.434 kb on - strand, within GFF1236at 589.650 kb on + strandat 589.650 kb on + strandat 589.650 kb on + strandat 589.650 kb on + strandat 589.650 kb on + strandat 589.650 kb on + strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strandat 589.651 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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587,616 + GFF1233 0.19 -0.3
587,617 - GFF1233 0.19 -0.1
587,666 + GFF1233 0.24 -0.6
587,667 - GFF1233 0.24 -0.8
587,852 + GFF1233 0.44 +0.2
587,852 + GFF1233 0.44 -0.0
587,924 + GFF1233 0.52 -0.9
587,924 + GFF1233 0.52 -0.1
588,107 + GFF1233 0.72 +0.8
588,131 + GFF1233 0.75 +0.4
588,131 + GFF1233 0.75 -0.4
588,131 + GFF1233 0.75 +2.4
588,131 + GFF1233 0.75 +0.2
588,131 + GFF1233 0.75 +0.1
588,131 + GFF1233 0.75 +0.3
588,131 + GFF1233 0.75 -0.0
588,131 + GFF1233 0.75 +0.3
588,131 + GFF1233 0.75 +1.6
588,131 + GFF1233 0.75 +0.2
588,131 + GFF1233 0.75 +0.8
588,131 + GFF1233 0.75 -0.5
588,131 + GFF1233 0.75 -0.1
588,131 + GFF1233 0.75 -0.1
588,131 + GFF1233 0.75 +0.3
588,131 + GFF1233 0.75 +0.4
588,132 - GFF1233 0.75 -0.5
588,132 - GFF1233 0.75 +0.8
588,132 - GFF1233 0.75 -0.4
588,132 - GFF1233 0.75 +0.2
588,132 - GFF1233 0.75 -0.1
588,132 - GFF1233 0.75 +0.4
588,132 - GFF1233 0.75 +0.2
588,132 - GFF1233 0.75 -1.4
588,132 - GFF1233 0.75 +0.3
588,132 - GFF1233 0.75 -2.7
588,132 - GFF1233 0.75 -0.2
588,132 - GFF1233 0.75 -0.4
588,132 - GFF1233 0.75 +0.3
588,200 + GFF1233 0.82 -0.2
588,201 - GFF1233 0.82 +0.1
588,228 + GFF1233 0.85 -0.7
588,228 + GFF1233 0.85 -1.4
588,229 - GFF1233 0.86 -0.5
588,229 - GFF1233 0.86 +0.3
588,357 - -0.6
588,450 - +0.6
588,453 + +0.9
588,453 + -1.6
588,453 + -0.3
588,454 - +1.4
588,454 - +0.6
588,454 - -0.1
588,454 - -0.1
588,454 - +0.3
588,454 - -0.2
588,454 - -0.2
588,454 - -0.0
588,454 - -0.4
588,464 + +1.3
588,561 + GFF1234 0.52 +1.9
588,562 - GFF1234 0.52 +0.4
588,562 - GFF1234 0.52 +0.2
588,597 - GFF1234 0.68 +0.3
588,717 + +0.1
588,717 + -0.9
588,718 - -0.9
588,718 - -0.5
588,860 + GFF1235 0.27 -0.3
588,860 + GFF1235 0.27 +0.3
588,860 + GFF1235 0.27 -0.5
588,860 + GFF1235 0.27 -0.2
588,861 - GFF1235 0.27 +1.5
588,861 - GFF1235 0.27 -0.1
588,999 + GFF1235 0.53 +1.2
589,000 - GFF1235 0.53 -1.2
589,129 + GFF1235 0.77 -0.6
589,130 - GFF1235 0.78 -1.2
589,130 - GFF1235 0.78 -0.7
589,130 - GFF1235 0.78 +0.5
589,174 + GFF1235 0.86 -0.2
589,174 + GFF1235 0.86 -1.4
589,175 - GFF1235 0.86 +0.3
589,177 - GFF1235 0.86 -1.0
589,177 - GFF1235 0.86 -0.1
589,433 + GFF1236 0.76 -0.4
589,434 - GFF1236 0.77 +0.7
589,650 + -0.2
589,650 + +0.2
589,650 + -0.6
589,650 + +0.4
589,650 + +0.4
589,650 + -1.1
589,651 - -1.6
589,651 - -0.4
589,651 - +0.4
589,651 - +0.2
589,651 - -0.3
589,651 - +0.9
589,651 - -0.3

Or see this region's nucleotide sequence