Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1212 and GFF1213 overlap by 23 nucleotides GFF1213 and GFF1214 are separated by 60 nucleotides GFF1214 and GFF1215 are separated by 295 nucleotides
GFF1212 - Swarming motility protein SwrC, at 550,815 to 553,874
GFF1212
GFF1213 - L-threonine 3-dehydrogenase, at 553,852 to 554,787
GFF1213
GFF1214 - Inner membrane protein YqjF, at 554,848 to 555,279
GFF1214
GFF1215 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 555,575 to 556,408
GFF1215
Position (kb) 554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 554.210 kb on + strand, within GFF1213 at 554.210 kb on + strand, within GFF1213 at 554.211 kb on - strand, within GFF1213 at 554.246 kb on + strand, within GFF1213 at 554.246 kb on + strand, within GFF1213 at 554.282 kb on + strand, within GFF1213 at 554.282 kb on + strand, within GFF1213 at 554.282 kb on + strand, within GFF1213 at 554.282 kb on + strand, within GFF1213 at 554.282 kb on + strand, within GFF1213 at 554.282 kb on + strand, within GFF1213 at 554.283 kb on - strand, within GFF1213 at 554.283 kb on - strand, within GFF1213 at 554.283 kb on - strand, within GFF1213 at 554.283 kb on - strand, within GFF1213 at 554.283 kb on - strand, within GFF1213 at 554.283 kb on - strand, within GFF1213 at 554.283 kb on - strand, within GFF1213 at 554.444 kb on - strand, within GFF1213 at 555.024 kb on + strand, within GFF1214 at 555.025 kb on - strand, within GFF1214 at 555.129 kb on - strand, within GFF1214 at 555.362 kb on - strand at 555.411 kb on + strand at 555.412 kb on - strand at 555.568 kb on + strand at 555.586 kb on + strand at 555.586 kb on + strand at 555.602 kb on - strand at 555.602 kb on - strand at 555.775 kb on - strand, within GFF1215 at 555.837 kb on - strand, within GFF1215 at 555.896 kb on + strand, within GFF1215 at 555.913 kb on + strand, within GFF1215 at 556.169 kb on + strand, within GFF1215 at 556.170 kb on - strand, within GFF1215 at 556.202 kb on + strand, within GFF1215 at 556.203 kb on - strand, within GFF1215 at 556.211 kb on + strand, within GFF1215 at 556.260 kb on - strand, within GFF1215
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 554,210 + GFF1213 0.38 -0.0 554,210 + GFF1213 0.38 -0.4 554,211 - GFF1213 0.38 -0.5 554,246 + GFF1213 0.42 -0.0 554,246 + GFF1213 0.42 -0.7 554,282 + GFF1213 0.46 +1.6 554,282 + GFF1213 0.46 -0.8 554,282 + GFF1213 0.46 -0.8 554,282 + GFF1213 0.46 -0.6 554,282 + GFF1213 0.46 -0.5 554,282 + GFF1213 0.46 -0.4 554,283 - GFF1213 0.46 -2.9 554,283 - GFF1213 0.46 +0.5 554,283 - GFF1213 0.46 -0.9 554,283 - GFF1213 0.46 -1.7 554,283 - GFF1213 0.46 -0.0 554,283 - GFF1213 0.46 +0.5 554,283 - GFF1213 0.46 +1.9 554,444 - GFF1213 0.63 +0.6 555,024 + GFF1214 0.41 +0.6 555,025 - GFF1214 0.41 +0.6 555,129 - GFF1214 0.65 +0.7 555,362 - +0.7 555,411 + -0.6 555,412 - +0.3 555,568 + -0.6 555,586 + -1.0 555,586 + -0.3 555,602 - +0.2 555,602 - +0.8 555,775 - GFF1215 0.24 +1.5 555,837 - GFF1215 0.31 -1.3 555,896 + GFF1215 0.38 -0.4 555,913 + GFF1215 0.41 -0.9 556,169 + GFF1215 0.71 +0.8 556,170 - GFF1215 0.71 -0.1 556,202 + GFF1215 0.75 +0.2 556,203 - GFF1215 0.75 -0.4 556,211 + GFF1215 0.76 -0.8 556,260 - GFF1215 0.82 -1.4
Or see this region's nucleotide sequence