Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1179 and GFF1180 overlap by 4 nucleotides GFF1180 and GFF1181 are separated by 163 nucleotides GFF1181 and GFF1182 are separated by 42 nucleotides GFF1182 and GFF1183 are separated by 3 nucleotides
GFF1179 - Acetyl esterase, at 515,863 to 516,846
GFF1179
GFF1180 - Tryptophan-rich sensory protein, at 516,843 to 517,286
GFF1180
GFF1181 - hypothetical protein, at 517,450 to 517,686
GFF1181
GFF1182 - hypothetical protein, at 517,729 to 518,640
GFF1182
GFF1183 - hypothetical protein, at 518,644 to 520,224
GFF1183
Position (kb) 517
518 Strain fitness (log2 ratio) -2
-1
0
1
2 at 516.908 kb on - strand, within GFF1180 at 517.141 kb on + strand, within GFF1180 at 517.141 kb on + strand, within GFF1180 at 517.142 kb on - strand, within GFF1180 at 517.142 kb on - strand, within GFF1180 at 517.142 kb on - strand, within GFF1180 at 517.158 kb on + strand, within GFF1180 at 517.298 kb on - strand at 517.324 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.453 kb on + strand at 517.454 kb on - strand at 517.454 kb on - strand at 517.454 kb on - strand at 517.454 kb on - strand at 517.454 kb on - strand at 517.454 kb on - strand at 517.459 kb on + strand at 517.459 kb on + strand at 517.459 kb on + strand at 517.460 kb on - strand at 517.494 kb on + strand, within GFF1181 at 517.495 kb on - strand, within GFF1181 at 517.498 kb on + strand, within GFF1181 at 517.499 kb on - strand, within GFF1181 at 517.499 kb on - strand, within GFF1181 at 517.499 kb on - strand, within GFF1181 at 517.660 kb on - strand, within GFF1181 at 517.660 kb on - strand, within GFF1181 at 517.681 kb on - strand at 517.748 kb on - strand at 517.885 kb on + strand, within GFF1182 at 518.126 kb on + strand, within GFF1182 at 518.126 kb on + strand, within GFF1182 at 518.153 kb on + strand, within GFF1182 at 518.153 kb on + strand, within GFF1182 at 518.154 kb on - strand, within GFF1182 at 518.154 kb on - strand, within GFF1182 at 518.439 kb on + strand, within GFF1182 at 518.440 kb on - strand, within GFF1182 at 518.627 kb on + strand at 518.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 516,908 - GFF1180 0.15 +0.5 517,141 + GFF1180 0.67 -1.7 517,141 + GFF1180 0.67 -0.6 517,142 - GFF1180 0.67 -1.0 517,142 - GFF1180 0.67 -2.1 517,142 - GFF1180 0.67 +2.6 517,158 + GFF1180 0.71 +1.0 517,298 - +1.5 517,324 + -0.7 517,453 + -0.7 517,453 + +0.0 517,453 + -0.4 517,453 + -0.4 517,453 + -0.9 517,453 + +0.5 517,453 + -0.8 517,453 + -0.2 517,453 + -0.2 517,453 + +0.8 517,453 + +0.0 517,454 - +0.2 517,454 - -0.6 517,454 - -0.1 517,454 - +0.6 517,454 - -0.3 517,454 - +0.3 517,459 + -0.1 517,459 + -0.3 517,459 + +0.6 517,460 - -2.3 517,494 + GFF1181 0.19 +0.2 517,495 - GFF1181 0.19 +1.0 517,498 + GFF1181 0.20 +0.2 517,499 - GFF1181 0.21 +0.9 517,499 - GFF1181 0.21 +0.3 517,499 - GFF1181 0.21 +0.2 517,660 - GFF1181 0.89 -1.1 517,660 - GFF1181 0.89 -0.3 517,681 - -0.2 517,748 - -0.2 517,885 + GFF1182 0.17 -0.8 518,126 + GFF1182 0.44 +0.3 518,126 + GFF1182 0.44 +0.9 518,153 + GFF1182 0.46 -0.1 518,153 + GFF1182 0.46 -0.3 518,154 - GFF1182 0.47 +0.1 518,154 - GFF1182 0.47 -1.0 518,439 + GFF1182 0.78 +1.5 518,440 - GFF1182 0.78 -2.5 518,627 + +0.1 518,628 - +0.7
Or see this region's nucleotide sequence