Strain Fitness in Pseudomonas sp. DMC3 around GFF1165

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1164 and GFF1165 are separated by 88 nucleotidesGFF1165 and GFF1166 are separated by 26 nucleotides GFF1164 - 3'3'-cGAMP-specific phosphodiesterase 3, at 502,756 to 504,195 GFF1164 GFF1165 - Pyrethroid hydrolase, at 504,284 to 505,057 GFF1165 GFF1166 - putative GMC-type oxidoreductase, at 505,084 to 506,628 GFF1166 Position (kb) 504 505 506Strain fitness (log2 ratio) -1 0 1at 503.307 kb on - strand, within GFF1164at 503.325 kb on + strand, within GFF1164at 503.332 kb on + strand, within GFF1164at 503.332 kb on + strand, within GFF1164at 503.332 kb on + strand, within GFF1164at 503.332 kb on + strand, within GFF1164at 503.333 kb on - strand, within GFF1164at 503.333 kb on - strand, within GFF1164at 503.366 kb on + strand, within GFF1164at 503.366 kb on + strand, within GFF1164at 503.388 kb on + strand, within GFF1164at 503.389 kb on - strand, within GFF1164at 503.389 kb on - strand, within GFF1164at 503.551 kb on - strand, within GFF1164at 503.749 kb on + strand, within GFF1164at 503.750 kb on - strand, within GFF1164at 503.750 kb on - strand, within GFF1164at 503.750 kb on - strand, within GFF1164at 504.175 kb on + strandat 504.175 kb on + strandat 504.175 kb on + strandat 504.176 kb on - strandat 504.176 kb on - strandat 504.367 kb on + strand, within GFF1165at 504.367 kb on + strand, within GFF1165at 504.623 kb on + strand, within GFF1165at 504.623 kb on + strand, within GFF1165at 504.624 kb on - strand, within GFF1165at 504.624 kb on - strand, within GFF1165at 504.624 kb on - strand, within GFF1165at 504.734 kb on + strand, within GFF1165at 504.735 kb on - strand, within GFF1165at 505.213 kb on + strandat 505.214 kb on - strandat 505.323 kb on - strand, within GFF1166at 505.445 kb on - strand, within GFF1166at 505.463 kb on - strand, within GFF1166at 505.465 kb on + strand, within GFF1166at 505.529 kb on + strand, within GFF1166at 505.529 kb on + strand, within GFF1166at 505.529 kb on + strand, within GFF1166at 505.708 kb on + strand, within GFF1166at 505.708 kb on + strand, within GFF1166

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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503,307 - GFF1164 0.38 +1.5
503,325 + GFF1164 0.40 +1.0
503,332 + GFF1164 0.40 -0.8
503,332 + GFF1164 0.40 -0.3
503,332 + GFF1164 0.40 -0.6
503,332 + GFF1164 0.40 +0.4
503,333 - GFF1164 0.40 -0.1
503,333 - GFF1164 0.40 -1.3
503,366 + GFF1164 0.42 +0.2
503,366 + GFF1164 0.42 +1.4
503,388 + GFF1164 0.44 +0.3
503,389 - GFF1164 0.44 -0.1
503,389 - GFF1164 0.44 -0.2
503,551 - GFF1164 0.55 +0.2
503,749 + GFF1164 0.69 -0.5
503,750 - GFF1164 0.69 -0.6
503,750 - GFF1164 0.69 -1.4
503,750 - GFF1164 0.69 +0.9
504,175 + -0.4
504,175 + +0.1
504,175 + +0.1
504,176 - +0.9
504,176 - -0.3
504,367 + GFF1165 0.11 +0.1
504,367 + GFF1165 0.11 +0.2
504,623 + GFF1165 0.44 +0.6
504,623 + GFF1165 0.44 -0.1
504,624 - GFF1165 0.44 +0.0
504,624 - GFF1165 0.44 +1.2
504,624 - GFF1165 0.44 +0.4
504,734 + GFF1165 0.58 +0.7
504,735 - GFF1165 0.58 -1.3
505,213 + +0.2
505,214 - -0.7
505,323 - GFF1166 0.15 -0.7
505,445 - GFF1166 0.23 -0.6
505,463 - GFF1166 0.25 +1.4
505,465 + GFF1166 0.25 +0.9
505,529 + GFF1166 0.29 -0.4
505,529 + GFF1166 0.29 +1.0
505,529 + GFF1166 0.29 -0.3
505,708 + GFF1166 0.40 -0.2
505,708 + GFF1166 0.40 -0.5

Or see this region's nucleotide sequence