Strain Fitness in Pseudomonas sp. DMC3 around GFF1106

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1105 and GFF1106 overlap by 1 nucleotidesGFF1106 and GFF1107 are separated by 77 nucleotidesGFF1107 and GFF1108 are separated by 64 nucleotides GFF1105 - hypothetical protein, at 448,057 to 449,730 GFF1105 GFF1106 - hypothetical protein, at 449,730 to 450,386 GFF1106 GFF1107 - hypothetical protein, at 450,464 to 450,754 GFF1107 GFF1108 - hypothetical protein, at 450,819 to 451,778 GFF1108 Position (kb) 449 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1at 448.833 kb on - strand, within GFF1105at 448.884 kb on + strand, within GFF1105at 448.884 kb on + strand, within GFF1105at 448.885 kb on - strand, within GFF1105at 448.888 kb on + strand, within GFF1105at 448.981 kb on - strand, within GFF1105at 448.981 kb on - strand, within GFF1105at 448.982 kb on + strand, within GFF1105at 448.982 kb on + strand, within GFF1105at 448.982 kb on + strand, within GFF1105at 448.983 kb on - strand, within GFF1105at 448.983 kb on - strand, within GFF1105at 448.983 kb on - strand, within GFF1105at 449.017 kb on + strand, within GFF1105at 449.033 kb on + strand, within GFF1105at 449.033 kb on + strand, within GFF1105at 449.034 kb on - strand, within GFF1105at 449.104 kb on + strand, within GFF1105at 449.105 kb on - strand, within GFF1105at 449.143 kb on + strand, within GFF1105at 449.143 kb on + strand, within GFF1105at 449.143 kb on + strand, within GFF1105at 449.144 kb on - strand, within GFF1105at 449.144 kb on - strand, within GFF1105at 449.144 kb on - strand, within GFF1105at 449.156 kb on + strand, within GFF1105at 449.206 kb on + strand, within GFF1105at 449.207 kb on - strand, within GFF1105at 449.207 kb on - strand, within GFF1105at 449.210 kb on + strand, within GFF1105at 449.210 kb on + strand, within GFF1105at 449.211 kb on - strand, within GFF1105at 449.211 kb on - strand, within GFF1105at 449.211 kb on - strand, within GFF1105at 449.370 kb on - strand, within GFF1105at 449.371 kb on + strand, within GFF1105at 449.371 kb on + strand, within GFF1105at 449.371 kb on + strand, within GFF1105at 449.371 kb on + strand, within GFF1105at 449.382 kb on - strand, within GFF1105at 449.438 kb on - strand, within GFF1105at 449.476 kb on - strand, within GFF1105at 449.494 kb on + strand, within GFF1105at 449.548 kb on + strand, within GFF1105at 449.590 kb on + strandat 449.590 kb on + strandat 449.591 kb on - strandat 449.591 kb on - strandat 449.591 kb on - strandat 449.591 kb on - strandat 449.591 kb on - strandat 449.599 kb on - strandat 449.599 kb on - strandat 449.660 kb on - strandat 449.660 kb on - strandat 449.693 kb on + strandat 449.693 kb on + strandat 449.694 kb on - strandat 449.708 kb on + strandat 449.708 kb on + strandat 449.709 kb on - strandat 449.761 kb on + strandat 449.762 kb on - strandat 449.833 kb on + strand, within GFF1106at 449.834 kb on - strand, within GFF1106at 449.853 kb on + strand, within GFF1106at 449.853 kb on + strand, within GFF1106at 449.854 kb on - strand, within GFF1106at 449.891 kb on + strand, within GFF1106at 450.072 kb on + strand, within GFF1106at 450.073 kb on - strand, within GFF1106at 450.169 kb on - strand, within GFF1106at 450.315 kb on + strand, within GFF1106at 450.322 kb on - strandat 450.348 kb on + strandat 450.348 kb on + strandat 450.349 kb on - strandat 450.349 kb on - strandat 450.349 kb on - strandat 450.349 kb on - strandat 450.356 kb on + strandat 450.357 kb on - strandat 450.357 kb on - strandat 450.357 kb on - strandat 450.384 kb on + strandat 450.423 kb on + strandat 450.471 kb on + strandat 450.503 kb on + strand, within GFF1107at 450.516 kb on - strand, within GFF1107at 450.521 kb on + strand, within GFF1107at 450.578 kb on + strand, within GFF1107at 450.578 kb on + strand, within GFF1107at 450.578 kb on + strand, within GFF1107at 450.609 kb on + strand, within GFF1107at 450.609 kb on + strand, within GFF1107at 450.609 kb on + strand, within GFF1107at 450.679 kb on - strand, within GFF1107at 450.689 kb on + strand, within GFF1107at 450.690 kb on - strand, within GFF1107at 450.695 kb on + strand, within GFF1107at 450.695 kb on + strand, within GFF1107at 450.695 kb on + strand, within GFF1107at 450.696 kb on - strand, within GFF1107at 450.708 kb on + strand, within GFF1107at 450.709 kb on - strand, within GFF1107at 450.709 kb on - strand, within GFF1107at 450.716 kb on + strand, within GFF1107at 450.716 kb on + strand, within GFF1107at 450.716 kb on + strand, within GFF1107at 450.716 kb on + strand, within GFF1107at 450.726 kb on + strandat 450.726 kb on + strandat 450.727 kb on - strandat 450.727 kb on - strandat 450.727 kb on - strandat 450.727 kb on - strandat 450.862 kb on + strandat 450.889 kb on - strandat 450.889 kb on - strandat 450.889 kb on - strandat 450.889 kb on - strandat 450.894 kb on + strandat 450.894 kb on + strandat 450.895 kb on - strandat 450.903 kb on + strandat 450.903 kb on + strandat 450.904 kb on - strandat 450.904 kb on - strandat 450.904 kb on - strandat 450.904 kb on - strandat 451.049 kb on - strand, within GFF1108at 451.049 kb on - strand, within GFF1108at 451.330 kb on - strand, within GFF1108

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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448,833 - GFF1105 0.46 -0.5
448,884 + GFF1105 0.49 -0.3
448,884 + GFF1105 0.49 +0.8
448,885 - GFF1105 0.49 -0.2
448,888 + GFF1105 0.50 +0.7
448,981 - GFF1105 0.55 -0.0
448,981 - GFF1105 0.55 -0.7
448,982 + GFF1105 0.55 +0.1
448,982 + GFF1105 0.55 +1.6
448,982 + GFF1105 0.55 +0.9
448,983 - GFF1105 0.55 -0.4
448,983 - GFF1105 0.55 -2.6
448,983 - GFF1105 0.55 -0.1
449,017 + GFF1105 0.57 +1.6
449,033 + GFF1105 0.58 -1.1
449,033 + GFF1105 0.58 -0.4
449,034 - GFF1105 0.58 -0.4
449,104 + GFF1105 0.63 -0.0
449,105 - GFF1105 0.63 -0.1
449,143 + GFF1105 0.65 -0.7
449,143 + GFF1105 0.65 -0.7
449,143 + GFF1105 0.65 +0.2
449,144 - GFF1105 0.65 -1.6
449,144 - GFF1105 0.65 -2.2
449,144 - GFF1105 0.65 -0.9
449,156 + GFF1105 0.66 +1.2
449,206 + GFF1105 0.69 +0.7
449,207 - GFF1105 0.69 -2.0
449,207 - GFF1105 0.69 -0.3
449,210 + GFF1105 0.69 -1.1
449,210 + GFF1105 0.69 -0.2
449,211 - GFF1105 0.69 -0.7
449,211 - GFF1105 0.69 +0.2
449,211 - GFF1105 0.69 -0.2
449,370 - GFF1105 0.78 -0.3
449,371 + GFF1105 0.78 +0.1
449,371 + GFF1105 0.78 -0.6
449,371 + GFF1105 0.78 -0.2
449,371 + GFF1105 0.78 +0.3
449,382 - GFF1105 0.79 +1.6
449,438 - GFF1105 0.82 +0.9
449,476 - GFF1105 0.85 +0.9
449,494 + GFF1105 0.86 -0.0
449,548 + GFF1105 0.89 -0.1
449,590 + -0.3
449,590 + -1.1
449,591 - +0.7
449,591 - +0.1
449,591 - +0.1
449,591 - -0.1
449,591 - -0.1
449,599 - -1.4
449,599 - -0.6
449,660 - -0.3
449,660 - +1.3
449,693 + +0.3
449,693 + -0.7
449,694 - +0.5
449,708 + +0.2
449,708 + -0.7
449,709 - +0.8
449,761 + +0.3
449,762 - +0.4
449,833 + GFF1106 0.16 +0.4
449,834 - GFF1106 0.16 -0.1
449,853 + GFF1106 0.19 +0.2
449,853 + GFF1106 0.19 +0.2
449,854 - GFF1106 0.19 +0.3
449,891 + GFF1106 0.25 +0.6
450,072 + GFF1106 0.52 +0.1
450,073 - GFF1106 0.52 +0.5
450,169 - GFF1106 0.67 -1.4
450,315 + GFF1106 0.89 +1.6
450,322 - +0.2
450,348 + +0.5
450,348 + -0.1
450,349 - +0.1
450,349 - -1.2
450,349 - -1.3
450,349 - -0.7
450,356 + +0.1
450,357 - -0.0
450,357 - +0.3
450,357 - +0.1
450,384 + -1.0
450,423 + +1.2
450,471 + -0.2
450,503 + GFF1107 0.13 -0.1
450,516 - GFF1107 0.18 +0.6
450,521 + GFF1107 0.20 -3.1
450,578 + GFF1107 0.39 -0.2
450,578 + GFF1107 0.39 +0.2
450,578 + GFF1107 0.39 -0.1
450,609 + GFF1107 0.50 +0.2
450,609 + GFF1107 0.50 -0.6
450,609 + GFF1107 0.50 -0.1
450,679 - GFF1107 0.74 +0.4
450,689 + GFF1107 0.77 +0.1
450,690 - GFF1107 0.78 -0.2
450,695 + GFF1107 0.79 +0.2
450,695 + GFF1107 0.79 -0.5
450,695 + GFF1107 0.79 +0.2
450,696 - GFF1107 0.80 +0.2
450,708 + GFF1107 0.84 +0.7
450,709 - GFF1107 0.84 +0.5
450,709 - GFF1107 0.84 +0.4
450,716 + GFF1107 0.87 -0.3
450,716 + GFF1107 0.87 +0.1
450,716 + GFF1107 0.87 -1.3
450,716 + GFF1107 0.87 -0.4
450,726 + +0.4
450,726 + -0.2
450,727 - -0.2
450,727 - +0.6
450,727 - -0.1
450,727 - +0.8
450,862 + +0.6
450,889 - +0.5
450,889 - +0.2
450,889 - -1.7
450,889 - +1.2
450,894 + -0.4
450,894 + +0.0
450,895 - +0.5
450,903 + +0.9
450,903 + -0.6
450,904 - +1.5
450,904 - -1.1
450,904 - +0.1
450,904 - +0.2
451,049 - GFF1108 0.24 -0.9
451,049 - GFF1108 0.24 -0.2
451,330 - GFF1108 0.53 -0.7

Or see this region's nucleotide sequence