Strain Fitness in Pseudomonas sp. DMC3 around GFF1045

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1043 and GFF1044 overlap by 1 nucleotidesGFF1044 and GFF1045 are separated by 264 nucleotidesGFF1045 and GFF1046 are separated by 129 nucleotidesGFF1046 and GFF1047 are separated by 144 nucleotides GFF1043 - hypothetical protein, at 388,636 to 389,115 GFF1043 GFF1044 - SCO1 protein, at 389,115 to 389,720 GFF1044 GFF1045 - Galactose 1-dehydrogenase, at 389,985 to 390,911 GFF1045 GFF1046 - putative hydrolase YcaC, at 391,041 to 391,670 GFF1046 GFF1047 - hypothetical protein, at 391,815 to 392,015 GFF1047 Position (kb) 389 390 391Strain fitness (log2 ratio) -2 -1 0 1 2at 389.080 kb on + strandat 389.080 kb on + strandat 389.080 kb on + strandat 389.080 kb on + strandat 389.080 kb on + strandat 389.080 kb on + strandat 389.081 kb on - strandat 389.081 kb on - strandat 389.081 kb on - strandat 389.081 kb on - strandat 389.081 kb on - strandat 389.129 kb on + strandat 389.130 kb on - strandat 389.136 kb on - strandat 389.136 kb on - strandat 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.215 kb on + strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.216 kb on - strand, within GFF1044at 389.228 kb on + strand, within GFF1044at 389.228 kb on + strand, within GFF1044at 389.228 kb on + strand, within GFF1044at 389.228 kb on + strand, within GFF1044at 389.229 kb on - strand, within GFF1044at 389.229 kb on - strand, within GFF1044at 389.242 kb on + strand, within GFF1044at 389.242 kb on + strand, within GFF1044at 389.242 kb on + strand, within GFF1044at 389.242 kb on + strand, within GFF1044at 389.242 kb on + strand, within GFF1044at 389.242 kb on + strand, within GFF1044at 389.243 kb on - strand, within GFF1044at 389.243 kb on - strand, within GFF1044at 389.243 kb on - strand, within GFF1044at 389.243 kb on - strand, within GFF1044at 389.269 kb on + strand, within GFF1044at 389.269 kb on + strand, within GFF1044at 389.270 kb on - strand, within GFF1044at 389.270 kb on - strand, within GFF1044at 389.357 kb on - strand, within GFF1044at 389.471 kb on + strand, within GFF1044at 389.472 kb on - strand, within GFF1044at 389.472 kb on - strand, within GFF1044at 389.623 kb on + strand, within GFF1044at 389.623 kb on + strand, within GFF1044at 389.623 kb on + strand, within GFF1044at 389.623 kb on + strand, within GFF1044at 389.624 kb on - strand, within GFF1044at 389.691 kb on + strandat 389.692 kb on - strandat 389.722 kb on + strandat 389.722 kb on + strandat 389.722 kb on + strandat 389.722 kb on + strandat 389.723 kb on - strandat 389.723 kb on - strandat 389.723 kb on - strandat 389.723 kb on - strandat 389.775 kb on + strandat 389.775 kb on + strandat 389.776 kb on - strandat 389.791 kb on + strandat 389.858 kb on - strandat 389.858 kb on - strandat 389.875 kb on - strandat 389.875 kb on - strandat 389.875 kb on - strandat 389.881 kb on + strandat 389.881 kb on + strandat 389.882 kb on - strandat 389.888 kb on - strandat 389.936 kb on + strandat 389.936 kb on + strandat 389.937 kb on - strandat 389.937 kb on - strandat 389.937 kb on - strandat 389.937 kb on - strandat 389.937 kb on - strandat 389.983 kb on + strandat 389.984 kb on - strandat 389.984 kb on - strandat 390.345 kb on + strand, within GFF1045at 390.346 kb on - strand, within GFF1045at 390.778 kb on - strand, within GFF1045at 390.789 kb on + strand, within GFF1045at 390.904 kb on - strandat 390.904 kb on - strandat 390.942 kb on - strandat 390.942 kb on - strandat 390.961 kb on - strandat 390.961 kb on - strandat 390.981 kb on + strandat 390.982 kb on - strandat 390.982 kb on - strandat 390.982 kb on - strandat 390.982 kb on - strandat 390.988 kb on + strandat 391.284 kb on + strand, within GFF1046at 391.284 kb on + strand, within GFF1046at 391.284 kb on + strand, within GFF1046at 391.284 kb on + strand, within GFF1046at 391.284 kb on + strand, within GFF1046at 391.284 kb on + strand, within GFF1046at 391.284 kb on + strand, within GFF1046at 391.384 kb on + strand, within GFF1046at 391.384 kb on + strand, within GFF1046at 391.385 kb on - strand, within GFF1046at 391.399 kb on + strand, within GFF1046at 391.644 kb on + strandat 391.644 kb on + strandat 391.644 kb on + strandat 391.668 kb on + strandat 391.668 kb on + strandat 391.786 kb on - strandat 391.789 kb on + strandat 391.790 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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389,080 + -1.1
389,080 + -0.2
389,080 + -0.2
389,080 + -1.1
389,080 + -1.4
389,080 + -2.7
389,081 - +0.7
389,081 - +0.1
389,081 - -0.2
389,081 - +0.8
389,081 - +0.8
389,129 + -0.6
389,130 - -2.2
389,136 - -0.1
389,136 - +0.0
389,215 + GFF1044 0.17 +0.2
389,215 + GFF1044 0.17 +1.2
389,215 + GFF1044 0.17 +0.3
389,215 + GFF1044 0.17 -0.4
389,215 + GFF1044 0.17 -0.7
389,215 + GFF1044 0.17 -0.8
389,215 + GFF1044 0.17 -0.6
389,215 + GFF1044 0.17 -1.0
389,215 + GFF1044 0.17 -1.3
389,215 + GFF1044 0.17 -1.1
389,215 + GFF1044 0.17 +0.1
389,216 - GFF1044 0.17 -1.1
389,216 - GFF1044 0.17 +0.2
389,216 - GFF1044 0.17 +0.0
389,216 - GFF1044 0.17 -0.4
389,216 - GFF1044 0.17 -0.9
389,216 - GFF1044 0.17 -0.9
389,216 - GFF1044 0.17 +0.0
389,216 - GFF1044 0.17 +0.6
389,216 - GFF1044 0.17 +0.5
389,228 + GFF1044 0.19 +1.1
389,228 + GFF1044 0.19 -0.6
389,228 + GFF1044 0.19 +0.7
389,228 + GFF1044 0.19 +1.7
389,229 - GFF1044 0.19 +0.1
389,229 - GFF1044 0.19 +0.6
389,242 + GFF1044 0.21 +0.7
389,242 + GFF1044 0.21 +0.2
389,242 + GFF1044 0.21 -0.9
389,242 + GFF1044 0.21 -0.1
389,242 + GFF1044 0.21 +0.6
389,242 + GFF1044 0.21 +1.8
389,243 - GFF1044 0.21 -1.1
389,243 - GFF1044 0.21 -1.1
389,243 - GFF1044 0.21 +0.8
389,243 - GFF1044 0.21 +1.1
389,269 + GFF1044 0.25 +0.6
389,269 + GFF1044 0.25 -1.2
389,270 - GFF1044 0.26 -1.6
389,270 - GFF1044 0.26 +0.8
389,357 - GFF1044 0.40 -0.5
389,471 + GFF1044 0.59 +0.8
389,472 - GFF1044 0.59 +0.2
389,472 - GFF1044 0.59 +1.0
389,623 + GFF1044 0.84 +0.6
389,623 + GFF1044 0.84 +0.4
389,623 + GFF1044 0.84 -0.4
389,623 + GFF1044 0.84 -0.4
389,624 - GFF1044 0.84 -0.2
389,691 + -1.9
389,692 - -1.4
389,722 + +0.3
389,722 + -0.2
389,722 + +0.4
389,722 + -1.8
389,723 - -1.6
389,723 - -0.6
389,723 - +1.8
389,723 - +0.8
389,775 + +1.2
389,775 + +1.8
389,776 - -0.0
389,791 + -0.2
389,858 - +1.0
389,858 - -1.5
389,875 - +0.8
389,875 - +0.6
389,875 - +0.5
389,881 + -0.4
389,881 + -1.2
389,882 - +0.3
389,888 - +0.5
389,936 + +0.2
389,936 + -0.4
389,937 - -0.5
389,937 - -0.2
389,937 - +0.8
389,937 - -0.6
389,937 - -0.3
389,983 + +0.1
389,984 - -0.3
389,984 - -0.5
390,345 + GFF1045 0.39 +0.4
390,346 - GFF1045 0.39 +0.5
390,778 - GFF1045 0.86 -1.9
390,789 + GFF1045 0.87 +0.9
390,904 - -2.2
390,904 - -0.4
390,942 - -0.1
390,942 - -1.4
390,961 - +0.1
390,961 - +0.6
390,981 + -0.2
390,982 - -0.1
390,982 - +1.7
390,982 - +0.5
390,982 - -0.2
390,988 + -0.3
391,284 + GFF1046 0.39 +0.0
391,284 + GFF1046 0.39 -0.1
391,284 + GFF1046 0.39 -1.5
391,284 + GFF1046 0.39 +1.2
391,284 + GFF1046 0.39 +0.4
391,284 + GFF1046 0.39 -0.1
391,284 + GFF1046 0.39 +0.1
391,384 + GFF1046 0.54 +0.4
391,384 + GFF1046 0.54 -1.8
391,385 - GFF1046 0.55 +0.3
391,399 + GFF1046 0.57 +1.1
391,644 + -0.4
391,644 + +0.2
391,644 + +0.2
391,668 + -0.9
391,668 + +0.3
391,786 - +1.5
391,789 + -1.1
391,790 - +0.1

Or see this region's nucleotide sequence