Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_28730 and finO are separated by 136 nucleotides finO and dAP2 are separated by 102 nucleotides dAP2 and traX are separated by 58 nucleotides traX and NIAGMN_28750 are separated by 19 nucleotides
NIAGMN_28730: NIAGMN_28730 - hypothetical protein, at 48,703 to 48,954
_28730
NIAGMN_28735: finO - Fertility inhibition protein, at 49,091 to 49,651
finO
NIAGMN_28740: dAP2 - Uncharacterized protein in traX-finO intergenic region, at 49,754 to 50,614
dAP2
NIAGMN_28745: traX - conjugal transfer pilus acetylase TraX, at 50,673 to 51,419
traX
NIAGMN_28750: NIAGMN_28750 - TraI domain-containing protein, at 51,439 to 52,695
_28750
Position (kb) 49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 48.989 kb on + strand at 48.990 kb on - strand at 48.990 kb on - strand at 48.997 kb on + strand at 48.998 kb on - strand at 49.001 kb on + strand at 49.002 kb on - strand at 49.002 kb on - strand at 49.038 kb on + strand at 49.049 kb on - strand at 49.056 kb on - strand at 49.170 kb on + strand, within finO at 49.171 kb on - strand, within finO at 49.171 kb on - strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.192 kb on + strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.193 kb on - strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.206 kb on + strand, within finO at 49.207 kb on - strand, within finO at 49.207 kb on - strand, within finO at 49.254 kb on + strand, within finO at 49.254 kb on + strand, within finO at 49.254 kb on + strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.255 kb on - strand, within finO at 49.391 kb on + strand, within finO at 49.392 kb on - strand, within finO at 49.452 kb on + strand, within finO at 49.452 kb on + strand, within finO at 49.452 kb on + strand, within finO at 49.453 kb on - strand, within finO at 49.453 kb on - strand, within finO at 49.655 kb on + strand at 49.655 kb on + strand at 49.656 kb on - strand at 49.739 kb on + strand at 49.740 kb on - strand at 49.745 kb on + strand at 49.746 kb on - strand at 49.756 kb on - strand at 49.761 kb on + strand at 49.761 kb on + strand at 49.791 kb on - strand at 49.791 kb on - strand at 49.793 kb on + strand at 49.794 kb on - strand at 49.818 kb on + strand at 49.818 kb on + strand at 49.818 kb on + strand at 49.819 kb on - strand at 49.819 kb on - strand at 49.822 kb on + strand at 49.823 kb on - strand at 49.823 kb on - strand at 49.823 kb on - strand at 49.827 kb on + strand at 49.828 kb on - strand at 49.828 kb on - strand at 49.828 kb on - strand at 49.828 kb on - strand at 49.853 kb on + strand, within dAP2 at 49.853 kb on + strand, within dAP2 at 49.854 kb on - strand, within dAP2 at 49.862 kb on - strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.884 kb on + strand, within dAP2 at 49.885 kb on - strand, within dAP2 at 49.885 kb on - strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.886 kb on + strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.887 kb on - strand, within dAP2 at 49.919 kb on - strand, within dAP2 at 49.933 kb on + strand, within dAP2 at 49.934 kb on - strand, within dAP2 at 49.982 kb on - strand, within dAP2 at 49.982 kb on - strand, within dAP2 at 49.982 kb on - strand, within dAP2 at 49.983 kb on + strand, within dAP2 at 49.984 kb on - strand, within dAP2 at 49.984 kb on - strand, within dAP2 at 49.984 kb on - strand, within dAP2 at 50.005 kb on + strand, within dAP2 at 50.016 kb on - strand, within dAP2 at 50.016 kb on - strand, within dAP2 at 50.021 kb on + strand, within dAP2 at 50.022 kb on - strand, within dAP2 at 50.022 kb on - strand, within dAP2 at 50.084 kb on + strand, within dAP2 at 50.084 kb on + strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.085 kb on - strand, within dAP2 at 50.088 kb on - strand, within dAP2 at 50.096 kb on - strand, within dAP2 at 50.096 kb on - strand, within dAP2 at 50.096 kb on - strand, within dAP2 at 50.147 kb on - strand, within dAP2 at 50.239 kb on + strand, within dAP2 at 50.239 kb on + strand, within dAP2 at 50.240 kb on - strand, within dAP2 at 50.240 kb on - strand, within dAP2 at 50.247 kb on - strand, within dAP2 at 50.323 kb on + strand, within dAP2 at 50.330 kb on - strand, within dAP2 at 50.330 kb on - strand, within dAP2 at 50.365 kb on + strand, within dAP2 at 50.365 kb on + strand, within dAP2 at 50.365 kb on + strand, within dAP2 at 50.365 kb on + strand, within dAP2 at 50.366 kb on - strand, within dAP2 at 50.366 kb on - strand, within dAP2 at 50.366 kb on - strand, within dAP2 at 50.366 kb on - strand, within dAP2 at 50.525 kb on + strand, within dAP2 at 50.525 kb on + strand, within dAP2 at 50.526 kb on - strand, within dAP2 at 50.526 kb on - strand, within dAP2 at 50.526 kb on - strand, within dAP2 at 50.530 kb on + strand at 50.530 kb on + strand at 50.531 kb on - strand at 50.531 kb on - strand at 50.547 kb on - strand at 50.547 kb on - strand at 50.547 kb on - strand at 50.547 kb on - strand at 50.549 kb on - strand at 50.549 kb on - strand at 50.582 kb on - strand at 50.582 kb on - strand at 50.606 kb on - strand at 50.615 kb on - strand at 50.615 kb on - strand at 50.619 kb on - strand at 50.628 kb on + strand at 50.628 kb on + strand at 50.628 kb on + strand at 50.628 kb on + strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.629 kb on - strand at 50.638 kb on - strand at 50.640 kb on + strand at 50.640 kb on + strand at 50.643 kb on + strand at 50.663 kb on - strand at 50.663 kb on - strand at 50.663 kb on - strand at 50.713 kb on + strand at 50.713 kb on + strand at 50.713 kb on + strand at 50.713 kb on + strand at 50.714 kb on - strand at 50.714 kb on - strand at 50.714 kb on - strand at 50.714 kb on - strand at 50.714 kb on - strand at 50.714 kb on - strand at 50.811 kb on + strand, within traX at 50.811 kb on + strand, within traX at 50.812 kb on - strand, within traX at 50.812 kb on - strand, within traX at 50.812 kb on - strand, within traX at 50.812 kb on - strand, within traX at 50.840 kb on + strand, within traX at 50.840 kb on + strand, within traX at 50.840 kb on + strand, within traX at 50.840 kb on + strand, within traX at 50.841 kb on - strand, within traX at 50.841 kb on - strand, within traX at 50.841 kb on - strand, within traX at 50.954 kb on - strand, within traX at 51.008 kb on + strand, within traX at 51.008 kb on + strand, within traX at 51.009 kb on - strand, within traX at 51.009 kb on - strand, within traX at 51.074 kb on + strand, within traX at 51.074 kb on + strand, within traX at 51.085 kb on + strand, within traX at 51.086 kb on - strand, within traX at 51.106 kb on + strand, within traX at 51.106 kb on + strand, within traX at 51.106 kb on + strand, within traX at 51.106 kb on + strand, within traX at 51.106 kb on + strand, within traX at 51.107 kb on - strand, within traX at 51.107 kb on - strand, within traX at 51.107 kb on - strand, within traX at 51.107 kb on - strand, within traX at 51.125 kb on + strand, within traX at 51.125 kb on + strand, within traX at 51.126 kb on - strand, within traX at 51.126 kb on - strand, within traX at 51.167 kb on + strand, within traX at 51.167 kb on + strand, within traX at 51.168 kb on - strand, within traX at 51.285 kb on + strand, within traX at 51.286 kb on - strand, within traX at 51.389 kb on + strand at 51.389 kb on + strand at 51.389 kb on + strand at 51.389 kb on + strand at 51.389 kb on + strand at 51.390 kb on - strand at 51.390 kb on - strand at 51.407 kb on + strand at 51.437 kb on + strand at 51.437 kb on + strand at 51.437 kb on + strand at 51.438 kb on - strand at 51.438 kb on - strand at 51.483 kb on + strand at 51.574 kb on + strand, within NIAGMN_28750 at 51.574 kb on + strand, within NIAGMN_28750 at 51.575 kb on - strand, within NIAGMN_28750 at 51.575 kb on - strand, within NIAGMN_28750 at 51.575 kb on - strand, within NIAGMN_28750
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 48,989 + +0.4 48,990 - +0.3 48,990 - +0.9 48,997 + -0.6 48,998 - -0.9 49,001 + +0.7 49,002 - +1.4 49,002 - +0.3 49,038 + -1.4 49,049 - -0.2 49,056 - -0.1 49,170 + finO NIAGMN_28735 0.14 -0.2 49,171 - finO NIAGMN_28735 0.14 -0.7 49,171 - finO NIAGMN_28735 0.14 +1.0 49,192 + finO NIAGMN_28735 0.18 -0.5 49,192 + finO NIAGMN_28735 0.18 -0.7 49,192 + finO NIAGMN_28735 0.18 +0.9 49,192 + finO NIAGMN_28735 0.18 -1.5 49,192 + finO NIAGMN_28735 0.18 -0.1 49,193 - finO NIAGMN_28735 0.18 +0.3 49,193 - finO NIAGMN_28735 0.18 -0.8 49,193 - finO NIAGMN_28735 0.18 -0.7 49,193 - finO NIAGMN_28735 0.18 +0.2 49,193 - finO NIAGMN_28735 0.18 -0.2 49,206 + finO NIAGMN_28735 0.20 +0.4 49,206 + finO NIAGMN_28735 0.20 -0.1 49,206 + finO NIAGMN_28735 0.20 +0.0 49,206 + finO NIAGMN_28735 0.20 -0.5 49,206 + finO NIAGMN_28735 0.20 -1.1 49,206 + finO NIAGMN_28735 0.20 +0.0 49,206 + finO NIAGMN_28735 0.20 -0.8 49,207 - finO NIAGMN_28735 0.21 -0.8 49,207 - finO NIAGMN_28735 0.21 -0.3 49,254 + finO NIAGMN_28735 0.29 +0.0 49,254 + finO NIAGMN_28735 0.29 -1.3 49,254 + finO NIAGMN_28735 0.29 -0.3 49,255 - finO NIAGMN_28735 0.29 -0.3 49,255 - finO NIAGMN_28735 0.29 +0.6 49,255 - finO NIAGMN_28735 0.29 +0.5 49,255 - finO NIAGMN_28735 0.29 -0.1 49,391 + finO NIAGMN_28735 0.53 +0.7 49,392 - finO NIAGMN_28735 0.54 +0.3 49,452 + finO NIAGMN_28735 0.64 -0.6 49,452 + finO NIAGMN_28735 0.64 -0.1 49,452 + finO NIAGMN_28735 0.64 -0.3 49,453 - finO NIAGMN_28735 0.65 -2.6 49,453 - finO NIAGMN_28735 0.65 -0.5 49,655 + +0.6 49,655 + +0.5 49,656 - +1.0 49,739 + -0.3 49,740 - +1.0 49,745 + +0.2 49,746 - -1.1 49,756 - -1.0 49,761 + -0.4 49,761 + +1.0 49,791 - +0.5 49,791 - -0.4 49,793 + +2.3 49,794 - -0.7 49,818 + -0.5 49,818 + +1.4 49,818 + +1.3 49,819 - +1.3 49,819 - +0.4 49,822 + +2.6 49,823 - -0.8 49,823 - -1.1 49,823 - -1.3 49,827 + -1.4 49,828 - +0.2 49,828 - -0.7 49,828 - +1.4 49,828 - -0.5 49,853 + dAP2 NIAGMN_28740 0.11 -0.3 49,853 + dAP2 NIAGMN_28740 0.11 -0.2 49,854 - dAP2 NIAGMN_28740 0.12 -0.5 49,862 - dAP2 NIAGMN_28740 0.13 +1.4 49,884 + dAP2 NIAGMN_28740 0.15 -1.5 49,884 + dAP2 NIAGMN_28740 0.15 -1.0 49,884 + dAP2 NIAGMN_28740 0.15 -1.1 49,884 + dAP2 NIAGMN_28740 0.15 -0.6 49,884 + dAP2 NIAGMN_28740 0.15 -0.2 49,885 - dAP2 NIAGMN_28740 0.15 -0.0 49,885 - dAP2 NIAGMN_28740 0.15 +0.0 49,886 + dAP2 NIAGMN_28740 0.15 -0.5 49,886 + dAP2 NIAGMN_28740 0.15 +1.6 49,886 + dAP2 NIAGMN_28740 0.15 -0.2 49,886 + dAP2 NIAGMN_28740 0.15 -0.5 49,886 + dAP2 NIAGMN_28740 0.15 -1.4 49,886 + dAP2 NIAGMN_28740 0.15 +0.3 49,886 + dAP2 NIAGMN_28740 0.15 +0.3 49,887 - dAP2 NIAGMN_28740 0.15 -0.7 49,887 - dAP2 NIAGMN_28740 0.15 +0.8 49,887 - dAP2 NIAGMN_28740 0.15 +1.1 49,887 - dAP2 NIAGMN_28740 0.15 -0.0 49,887 - dAP2 NIAGMN_28740 0.15 -0.7 49,887 - dAP2 NIAGMN_28740 0.15 +0.0 49,887 - dAP2 NIAGMN_28740 0.15 -0.6 49,887 - dAP2 NIAGMN_28740 0.15 +0.0 49,887 - dAP2 NIAGMN_28740 0.15 +0.0 49,887 - dAP2 NIAGMN_28740 0.15 +0.7 49,887 - dAP2 NIAGMN_28740 0.15 -0.3 49,887 - dAP2 NIAGMN_28740 0.15 +1.8 49,887 - dAP2 NIAGMN_28740 0.15 +0.5 49,919 - dAP2 NIAGMN_28740 0.19 +0.1 49,933 + dAP2 NIAGMN_28740 0.21 +0.0 49,934 - dAP2 NIAGMN_28740 0.21 -0.0 49,982 - dAP2 NIAGMN_28740 0.26 +0.1 49,982 - dAP2 NIAGMN_28740 0.26 -1.4 49,982 - dAP2 NIAGMN_28740 0.26 -0.2 49,983 + dAP2 NIAGMN_28740 0.27 +1.6 49,984 - dAP2 NIAGMN_28740 0.27 -0.2 49,984 - dAP2 NIAGMN_28740 0.27 -0.6 49,984 - dAP2 NIAGMN_28740 0.27 -1.4 50,005 + dAP2 NIAGMN_28740 0.29 -0.2 50,016 - dAP2 NIAGMN_28740 0.30 +0.0 50,016 - dAP2 NIAGMN_28740 0.30 +0.6 50,021 + dAP2 NIAGMN_28740 0.31 -1.0 50,022 - dAP2 NIAGMN_28740 0.31 +0.5 50,022 - dAP2 NIAGMN_28740 0.31 +0.7 50,084 + dAP2 NIAGMN_28740 0.38 +1.3 50,084 + dAP2 NIAGMN_28740 0.38 +1.4 50,085 - dAP2 NIAGMN_28740 0.38 -1.3 50,085 - dAP2 NIAGMN_28740 0.38 +1.0 50,085 - dAP2 NIAGMN_28740 0.38 -0.6 50,085 - dAP2 NIAGMN_28740 0.38 -1.6 50,085 - dAP2 NIAGMN_28740 0.38 -1.6 50,088 - dAP2 NIAGMN_28740 0.39 -1.0 50,096 - dAP2 NIAGMN_28740 0.40 -0.2 50,096 - dAP2 NIAGMN_28740 0.40 -0.9 50,096 - dAP2 NIAGMN_28740 0.40 -0.5 50,147 - dAP2 NIAGMN_28740 0.46 -0.9 50,239 + dAP2 NIAGMN_28740 0.56 -0.7 50,239 + dAP2 NIAGMN_28740 0.56 +0.2 50,240 - dAP2 NIAGMN_28740 0.56 +1.0 50,240 - dAP2 NIAGMN_28740 0.56 -0.6 50,247 - dAP2 NIAGMN_28740 0.57 -0.1 50,323 + dAP2 NIAGMN_28740 0.66 +2.2 50,330 - dAP2 NIAGMN_28740 0.67 -0.1 50,330 - dAP2 NIAGMN_28740 0.67 -0.7 50,365 + dAP2 NIAGMN_28740 0.71 -1.2 50,365 + dAP2 NIAGMN_28740 0.71 -0.4 50,365 + dAP2 NIAGMN_28740 0.71 +0.1 50,365 + dAP2 NIAGMN_28740 0.71 -0.8 50,366 - dAP2 NIAGMN_28740 0.71 +0.4 50,366 - dAP2 NIAGMN_28740 0.71 +0.1 50,366 - dAP2 NIAGMN_28740 0.71 +1.4 50,366 - dAP2 NIAGMN_28740 0.71 -0.5 50,525 + dAP2 NIAGMN_28740 0.90 -0.3 50,525 + dAP2 NIAGMN_28740 0.90 -1.4 50,526 - dAP2 NIAGMN_28740 0.90 -1.3 50,526 - dAP2 NIAGMN_28740 0.90 -0.0 50,526 - dAP2 NIAGMN_28740 0.90 -0.2 50,530 + +1.1 50,530 + -0.5 50,531 - -0.8 50,531 - -1.1 50,547 - +0.2 50,547 - +0.5 50,547 - -0.3 50,547 - +0.9 50,549 - +0.2 50,549 - -0.6 50,582 - +0.3 50,582 - +0.3 50,606 - -1.2 50,615 - +0.0 50,615 - +0.3 50,619 - -1.7 50,628 + -0.3 50,628 + +0.4 50,628 + -0.8 50,628 + -0.7 50,629 - +0.7 50,629 - +0.3 50,629 - +0.5 50,629 - -1.3 50,629 - +0.3 50,629 - -1.5 50,629 - -0.2 50,638 - -0.2 50,640 + -0.8 50,640 + -0.7 50,643 + +1.4 50,663 - +1.0 50,663 - +0.2 50,663 - -1.7 50,713 + +0.5 50,713 + -1.7 50,713 + -0.9 50,713 + -0.0 50,714 - -1.0 50,714 - +1.0 50,714 - +0.3 50,714 - +0.2 50,714 - -0.4 50,714 - +0.3 50,811 + traX NIAGMN_28745 0.18 -0.5 50,811 + traX NIAGMN_28745 0.18 -0.7 50,812 - traX NIAGMN_28745 0.19 +0.6 50,812 - traX NIAGMN_28745 0.19 -0.2 50,812 - traX NIAGMN_28745 0.19 +2.6 50,812 - traX NIAGMN_28745 0.19 +0.4 50,840 + traX NIAGMN_28745 0.22 -0.1 50,840 + traX NIAGMN_28745 0.22 +0.6 50,840 + traX NIAGMN_28745 0.22 -1.0 50,840 + traX NIAGMN_28745 0.22 +0.6 50,841 - traX NIAGMN_28745 0.22 -0.1 50,841 - traX NIAGMN_28745 0.22 -0.6 50,841 - traX NIAGMN_28745 0.22 +1.1 50,954 - traX NIAGMN_28745 0.38 -1.6 51,008 + traX NIAGMN_28745 0.45 -0.1 51,008 + traX NIAGMN_28745 0.45 -1.8 51,009 - traX NIAGMN_28745 0.45 -0.4 51,009 - traX NIAGMN_28745 0.45 -0.8 51,074 + traX NIAGMN_28745 0.54 +0.2 51,074 + traX NIAGMN_28745 0.54 +0.1 51,085 + traX NIAGMN_28745 0.55 -0.2 51,086 - traX NIAGMN_28745 0.55 +0.2 51,106 + traX NIAGMN_28745 0.58 -0.1 51,106 + traX NIAGMN_28745 0.58 -0.6 51,106 + traX NIAGMN_28745 0.58 +1.3 51,106 + traX NIAGMN_28745 0.58 -0.1 51,106 + traX NIAGMN_28745 0.58 -0.4 51,107 - traX NIAGMN_28745 0.58 -0.0 51,107 - traX NIAGMN_28745 0.58 -0.4 51,107 - traX NIAGMN_28745 0.58 +1.7 51,107 - traX NIAGMN_28745 0.58 -0.7 51,125 + traX NIAGMN_28745 0.61 +1.0 51,125 + traX NIAGMN_28745 0.61 +0.8 51,126 - traX NIAGMN_28745 0.61 +0.0 51,126 - traX NIAGMN_28745 0.61 -1.3 51,167 + traX NIAGMN_28745 0.66 -1.2 51,167 + traX NIAGMN_28745 0.66 -1.2 51,168 - traX NIAGMN_28745 0.66 +0.2 51,285 + traX NIAGMN_28745 0.82 -3.1 51,286 - traX NIAGMN_28745 0.82 +0.1 51,389 + -0.1 51,389 + -0.2 51,389 + +1.9 51,389 + +1.0 51,389 + -1.5 51,390 - -0.0 51,390 - -0.0 51,407 + -0.5 51,437 + +0.7 51,437 + +0.2 51,437 + +0.2 51,438 - -0.5 51,438 - -0.1 51,483 + -2.1 51,574 + NIAGMN_28750 0.11 -0.0 51,574 + NIAGMN_28750 0.11 -0.1 51,575 - NIAGMN_28750 0.11 +0.1 51,575 - NIAGMN_28750 0.11 -1.0 51,575 - NIAGMN_28750 0.11 +0.2
Or see this region's nucleotide sequence