Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt katP and tra5 are separated by 864 nucleotides tra5 and NIAGMN_28675 are separated by 358 nucleotides NIAGMN_28675 and parE are separated by 94 nucleotides parE and putA1 overlap by 1 nucleotides
NIAGMN_28665: katP - catalase/peroxidase KatP, at 40,070 to 42,280
katP
NIAGMN_28670: tra5 - IS3 family transposase, at 43,145 to 43,624
tra5
NIAGMN_28675: NIAGMN_28675 - hypothetical protein, at 43,983 to 44,189
_28675
NIAGMN_28680: parE - plasmid stabilization protein, at 44,284 to 44,559
parE
NIAGMN_28685: putA1 - CopG family transcriptional regulator, at 44,559 to 44,837
putA1
Position (kb) 43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 42.146 kb on + strand at 42.161 kb on + strand at 42.161 kb on + strand at 42.162 kb on - strand at 42.184 kb on - strand at 42.206 kb on - strand at 42.215 kb on + strand at 42.216 kb on - strand at 42.223 kb on + strand at 42.280 kb on + strand at 42.280 kb on + strand at 42.280 kb on + strand at 42.281 kb on - strand at 42.286 kb on + strand at 42.286 kb on + strand at 42.286 kb on + strand at 42.287 kb on - strand at 42.287 kb on - strand at 42.317 kb on + strand at 42.319 kb on + strand at 42.350 kb on + strand at 42.352 kb on + strand at 42.352 kb on + strand at 42.352 kb on + strand at 42.353 kb on - strand at 42.353 kb on - strand at 42.353 kb on - strand at 42.356 kb on + strand at 42.356 kb on + strand at 42.357 kb on - strand at 42.367 kb on + strand at 42.372 kb on - strand at 42.387 kb on + strand at 42.390 kb on + strand at 42.391 kb on - strand at 42.391 kb on - strand at 42.444 kb on + strand at 42.495 kb on - strand at 42.495 kb on - strand at 42.495 kb on - strand at 42.525 kb on - strand at 42.586 kb on + strand at 42.586 kb on + strand at 42.586 kb on + strand at 42.586 kb on + strand at 42.586 kb on + strand at 42.587 kb on - strand at 42.587 kb on - strand at 42.587 kb on - strand at 42.587 kb on - strand at 42.587 kb on - strand at 42.783 kb on + strand at 42.784 kb on - strand at 42.784 kb on - strand at 42.823 kb on + strand at 42.823 kb on + strand at 42.823 kb on + strand at 42.824 kb on - strand at 42.895 kb on + strand at 42.896 kb on - strand at 42.900 kb on + strand at 42.938 kb on + strand at 42.938 kb on + strand at 42.938 kb on + strand at 42.938 kb on + strand at 42.938 kb on + strand at 42.939 kb on - strand at 42.939 kb on - strand at 42.963 kb on + strand at 42.964 kb on - strand at 43.031 kb on - strand at 43.031 kb on - strand at 43.489 kb on + strand, within tra5 at 43.489 kb on + strand, within tra5 at 43.489 kb on + strand, within tra5 at 43.810 kb on - strand at 43.822 kb on - strand at 43.822 kb on - strand at 43.822 kb on - strand at 43.822 kb on - strand at 43.822 kb on - strand at 43.863 kb on + strand at 43.863 kb on + strand at 43.863 kb on + strand at 43.864 kb on - strand at 43.864 kb on - strand at 43.864 kb on - strand at 43.882 kb on + strand at 43.883 kb on - strand at 43.893 kb on - strand at 43.935 kb on - strand at 44.000 kb on - strand at 44.000 kb on - strand at 44.009 kb on - strand, within NIAGMN_28675 at 44.009 kb on - strand, within NIAGMN_28675 at 44.009 kb on - strand, within NIAGMN_28675 at 44.025 kb on + strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.026 kb on - strand, within NIAGMN_28675 at 44.028 kb on - strand, within NIAGMN_28675 at 44.028 kb on - strand, within NIAGMN_28675 at 44.031 kb on + strand, within NIAGMN_28675 at 44.031 kb on + strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.032 kb on - strand, within NIAGMN_28675 at 44.033 kb on + strand, within NIAGMN_28675 at 44.033 kb on + strand, within NIAGMN_28675 at 44.034 kb on - strand, within NIAGMN_28675 at 44.034 kb on - strand, within NIAGMN_28675 at 44.038 kb on - strand, within NIAGMN_28675 at 44.111 kb on + strand, within NIAGMN_28675 at 44.112 kb on - strand, within NIAGMN_28675 at 44.112 kb on - strand, within NIAGMN_28675 at 44.121 kb on - strand, within NIAGMN_28675 at 44.124 kb on - strand, within NIAGMN_28675 at 44.124 kb on - strand, within NIAGMN_28675 at 44.140 kb on + strand, within NIAGMN_28675 at 44.141 kb on - strand, within NIAGMN_28675 at 44.141 kb on - strand, within NIAGMN_28675 at 44.151 kb on - strand, within NIAGMN_28675 at 44.192 kb on + strand at 44.192 kb on + strand at 44.228 kb on - strand at 44.228 kb on - strand at 44.230 kb on + strand at 44.231 kb on - strand at 44.248 kb on - strand at 44.258 kb on + strand at 44.259 kb on - strand at 44.259 kb on - strand at 44.259 kb on - strand at 44.259 kb on - strand at 44.263 kb on + strand at 44.263 kb on + strand at 44.264 kb on - strand at 44.264 kb on - strand at 44.285 kb on + strand at 44.286 kb on - strand at 44.317 kb on + strand, within parE at 44.318 kb on - strand, within parE at 44.318 kb on - strand, within parE at 44.318 kb on - strand, within parE at 44.318 kb on - strand, within parE at 44.321 kb on + strand, within parE at 44.321 kb on + strand, within parE at 44.321 kb on + strand, within parE at 44.321 kb on + strand, within parE at 44.322 kb on - strand, within parE at 44.322 kb on - strand, within parE at 44.325 kb on + strand, within parE at 44.325 kb on + strand, within parE at 44.325 kb on + strand, within parE at 44.326 kb on - strand, within parE at 44.337 kb on + strand, within parE at 44.338 kb on - strand, within parE at 44.338 kb on - strand, within parE at 44.404 kb on + strand, within parE at 44.405 kb on - strand, within parE at 44.418 kb on + strand, within parE at 44.419 kb on - strand, within parE at 44.464 kb on + strand, within parE at 44.464 kb on + strand, within parE at 44.465 kb on - strand, within parE at 44.488 kb on - strand, within parE at 44.511 kb on - strand, within parE at 44.513 kb on - strand, within parE at 44.513 kb on - strand, within parE at 44.513 kb on - strand, within parE at 44.538 kb on + strand at 44.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 42,146 + +0.3 42,161 + -0.2 42,161 + -1.5 42,162 - -0.3 42,184 - +0.6 42,206 - -0.3 42,215 + -0.2 42,216 - -0.4 42,223 + +0.2 42,280 + -0.4 42,280 + -1.4 42,280 + +1.2 42,281 - +0.4 42,286 + -0.7 42,286 + -1.8 42,286 + +0.3 42,287 - +1.2 42,287 - -0.4 42,317 + -0.1 42,319 + +0.2 42,350 + -0.3 42,352 + +0.8 42,352 + -0.1 42,352 + +0.6 42,353 - -0.2 42,353 - +0.0 42,353 - +1.3 42,356 + +0.7 42,356 + -0.0 42,357 - -1.0 42,367 + -0.6 42,372 - +0.5 42,387 + -0.3 42,390 + -0.4 42,391 - -0.2 42,391 - +0.3 42,444 + -0.7 42,495 - +1.0 42,495 - -1.4 42,495 - -1.5 42,525 - +0.0 42,586 + -0.7 42,586 + -0.5 42,586 + -1.2 42,586 + -0.8 42,586 + +1.0 42,587 - -0.3 42,587 - +0.8 42,587 - +0.5 42,587 - +1.9 42,587 - +0.3 42,783 + +0.6 42,784 - +0.4 42,784 - +1.3 42,823 + -0.3 42,823 + +0.6 42,823 + -0.1 42,824 - +1.1 42,895 + +0.2 42,896 - -0.6 42,900 + +0.2 42,938 + -0.5 42,938 + -1.7 42,938 + +0.2 42,938 + -0.4 42,938 + +1.6 42,939 - +0.3 42,939 - -1.5 42,963 + +0.1 42,964 - -1.2 43,031 - +0.2 43,031 - -1.0 43,489 + tra5 NIAGMN_28670 0.72 +0.9 43,489 + tra5 NIAGMN_28670 0.72 +1.6 43,489 + tra5 NIAGMN_28670 0.72 -0.2 43,810 - -1.8 43,822 - -0.3 43,822 - -0.7 43,822 - +0.5 43,822 - -0.3 43,822 - -0.3 43,863 + -0.2 43,863 + +0.9 43,863 + -0.5 43,864 - -1.0 43,864 - -0.5 43,864 - -0.3 43,882 + +2.2 43,883 - -0.7 43,893 - +1.3 43,935 - -0.8 44,000 - -1.1 44,000 - +0.2 44,009 - NIAGMN_28675 0.13 -1.0 44,009 - NIAGMN_28675 0.13 +0.6 44,009 - NIAGMN_28675 0.13 -0.4 44,025 + NIAGMN_28675 0.20 +1.3 44,026 - NIAGMN_28675 0.21 -0.7 44,026 - NIAGMN_28675 0.21 +0.7 44,026 - NIAGMN_28675 0.21 -1.1 44,026 - NIAGMN_28675 0.21 -0.2 44,026 - NIAGMN_28675 0.21 -0.3 44,026 - NIAGMN_28675 0.21 +2.6 44,028 - NIAGMN_28675 0.22 +0.6 44,028 - NIAGMN_28675 0.22 +0.2 44,031 + NIAGMN_28675 0.23 -0.8 44,031 + NIAGMN_28675 0.23 -0.4 44,032 - NIAGMN_28675 0.24 -0.2 44,032 - NIAGMN_28675 0.24 -0.4 44,032 - NIAGMN_28675 0.24 +0.2 44,032 - NIAGMN_28675 0.24 -0.2 44,032 - NIAGMN_28675 0.24 -0.4 44,032 - NIAGMN_28675 0.24 -1.0 44,032 - NIAGMN_28675 0.24 -0.5 44,033 + NIAGMN_28675 0.24 +0.6 44,033 + NIAGMN_28675 0.24 +0.0 44,034 - NIAGMN_28675 0.25 +0.6 44,034 - NIAGMN_28675 0.25 -1.1 44,038 - NIAGMN_28675 0.27 -0.2 44,111 + NIAGMN_28675 0.62 -0.7 44,112 - NIAGMN_28675 0.62 -1.0 44,112 - NIAGMN_28675 0.62 +0.2 44,121 - NIAGMN_28675 0.67 +0.1 44,124 - NIAGMN_28675 0.68 +0.7 44,124 - NIAGMN_28675 0.68 -0.8 44,140 + NIAGMN_28675 0.76 -1.2 44,141 - NIAGMN_28675 0.76 +0.8 44,141 - NIAGMN_28675 0.76 +1.8 44,151 - NIAGMN_28675 0.81 -1.0 44,192 + +0.4 44,192 + -1.6 44,228 - -1.8 44,228 - -0.0 44,230 + +0.5 44,231 - -1.3 44,248 - +0.5 44,258 + -1.8 44,259 - -0.1 44,259 - +0.1 44,259 - -0.6 44,259 - -0.8 44,263 + +0.2 44,263 + -0.1 44,264 - -0.3 44,264 - -1.2 44,285 + -1.4 44,286 - +0.1 44,317 + parE NIAGMN_28680 0.12 -1.9 44,318 - parE NIAGMN_28680 0.12 -0.5 44,318 - parE NIAGMN_28680 0.12 -0.6 44,318 - parE NIAGMN_28680 0.12 -1.4 44,318 - parE NIAGMN_28680 0.12 +0.2 44,321 + parE NIAGMN_28680 0.13 -0.3 44,321 + parE NIAGMN_28680 0.13 -0.3 44,321 + parE NIAGMN_28680 0.13 +0.5 44,321 + parE NIAGMN_28680 0.13 +0.5 44,322 - parE NIAGMN_28680 0.14 -0.7 44,322 - parE NIAGMN_28680 0.14 +1.0 44,325 + parE NIAGMN_28680 0.15 -0.8 44,325 + parE NIAGMN_28680 0.15 +1.4 44,325 + parE NIAGMN_28680 0.15 +1.0 44,326 - parE NIAGMN_28680 0.15 -0.2 44,337 + parE NIAGMN_28680 0.19 -0.1 44,338 - parE NIAGMN_28680 0.20 -0.4 44,338 - parE NIAGMN_28680 0.20 -0.4 44,404 + parE NIAGMN_28680 0.43 -0.7 44,405 - parE NIAGMN_28680 0.44 +0.1 44,418 + parE NIAGMN_28680 0.49 +1.2 44,419 - parE NIAGMN_28680 0.49 +0.5 44,464 + parE NIAGMN_28680 0.65 +0.6 44,464 + parE NIAGMN_28680 0.65 +0.0 44,465 - parE NIAGMN_28680 0.66 -0.7 44,488 - parE NIAGMN_28680 0.74 +0.2 44,511 - parE NIAGMN_28680 0.82 +0.0 44,513 - parE NIAGMN_28680 0.83 +0.5 44,513 - parE NIAGMN_28680 0.83 +1.7 44,513 - parE NIAGMN_28680 0.83 +0.5 44,538 + -0.0 44,539 - +2.2
Or see this region's nucleotide sequence