Strain Fitness in Escherichia coli ECRC102 around NIAGMN_28035

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and hipB are separated by 173 nucleotideshipB and ompT are separated by 498 nucleotides NIAGMN_28025: tnp-IS3 - IS3 family transposase, at 5,429,190 to 5,430,077 tnp-IS3 NIAGMN_28030: tnp-IS3 - IS3 family transposase, at 5,430,077 to 5,430,403 tnp-IS3 NIAGMN_28035: hipB - transcriptional regulator, at 5,430,577 to 5,431,161 hipB NIAGMN_28040: ompT - omptin family outer membrane protease OmpT, at 5,431,660 to 5,432,613 ompT Position (kb) 5430 5431 5432Strain fitness (log2 ratio) -1 0 1at 5430.531 kb on - strandat 5430.608 kb on + strandat 5430.609 kb on - strandat 5430.961 kb on - strand, within hipBat 5430.961 kb on - strand, within hipBat 5431.354 kb on + strandat 5431.388 kb on + strandat 5431.421 kb on + strandat 5431.624 kb on + strandat 5431.659 kb on + strandat 5431.754 kb on + strandat 5431.754 kb on + strandat 5431.754 kb on + strandat 5431.754 kb on + strandat 5431.875 kb on + strand, within ompTat 5431.888 kb on - strand, within ompTat 5431.910 kb on + strand, within ompTat 5431.910 kb on + strand, within ompTat 5431.910 kb on + strand, within ompTat 5431.959 kb on + strand, within ompTat 5432.095 kb on + strand, within ompTat 5432.161 kb on + strand, within ompTat 5432.161 kb on + strand, within ompT

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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5,430,531 - -0.8
5,430,608 + -0.1
5,430,609 - -0.0
5,430,961 - hipB NIAGMN_28035 0.66 -0.1
5,430,961 - hipB NIAGMN_28035 0.66 -0.1
5,431,354 + +1.1
5,431,388 + -1.2
5,431,421 + +0.8
5,431,624 + -0.5
5,431,659 + -0.8
5,431,754 + -0.6
5,431,754 + -1.5
5,431,754 + +0.3
5,431,754 + -0.3
5,431,875 + ompT NIAGMN_28040 0.23 -0.8
5,431,888 - ompT NIAGMN_28040 0.24 -0.6
5,431,910 + ompT NIAGMN_28040 0.26 -0.1
5,431,910 + ompT NIAGMN_28040 0.26 +0.8
5,431,910 + ompT NIAGMN_28040 0.26 +0.5
5,431,959 + ompT NIAGMN_28040 0.31 +1.2
5,432,095 + ompT NIAGMN_28040 0.46 +0.7
5,432,161 + ompT NIAGMN_28040 0.53 +1.0
5,432,161 + ompT NIAGMN_28040 0.53 -1.3

Or see this region's nucleotide sequence