Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26550

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_26540 and ycjN are separated by 48 nucleotidesycjN and ycjM are separated by 13 nucleotidesycjM and NIAGMN_26555 overlap by 1 nucleotidesNIAGMN_26555 and pspE are separated by 209 nucleotidespspE and pspD are separated by 74 nucleotides NIAGMN_26540: NIAGMN_26540 - ABC transporter substrate-binding protein, at 5,165,495 to 5,166,109 _26540 NIAGMN_26545: ycjN - Putative ABC transporter periplasmic-binding protein YcjN, at 5,166,158 to 5,166,787 ycjN NIAGMN_26550: ycjM - Glucosylglycerate phosphorylase, at 5,166,801 to 5,168,105 ycjM NIAGMN_26555: NIAGMN_26555 - Alpha-amylase, at 5,168,105 to 5,168,479 _26555 NIAGMN_26560: pspE - thiosulfate sulfurtransferase PspE, at 5,168,689 to 5,169,003 pspE NIAGMN_26565: pspD - phage shock protein PspD, at 5,169,078 to 5,169,299 pspD Position (kb) 5166 5167 5168 5169Strain fitness (log2 ratio) -1 0 1at 5165.984 kb on - strand, within NIAGMN_26540at 5166.052 kb on + strandat 5166.160 kb on - strandat 5166.571 kb on + strand, within ycjNat 5168.877 kb on + strand, within pspE

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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5,165,984 - NIAGMN_26540 0.80 +0.3
5,166,052 + -0.1
5,166,160 - +0.3
5,166,571 + ycjN NIAGMN_26545 0.66 +0.6
5,168,877 + pspE NIAGMN_26560 0.60 -1.5

Or see this region's nucleotide sequence