Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycjY and NIAGMN_26445 overlap by 1 nucleotides NIAGMN_26445 and NIAGMN_26450 overlap by 62 nucleotides NIAGMN_26450 and wcaG are separated by 20 nucleotides wcaG and NIAGMN_26460 are separated by 290 nucleotides
NIAGMN_26440: ycjY - Uncharacterized protein YcjY, at 5,145,299 to 5,146,219
ycjY
NIAGMN_26445: NIAGMN_26445 - Peptidase-S15 domain-containing protein, at 5,146,219 to 5,146,587
_26445
NIAGMN_26450: NIAGMN_26450 - Hydrolase, at 5,146,526 to 5,147,149
_26450
NIAGMN_26455: wcaG - NAD-dependent dehydratase, at 5,147,170 to 5,147,808
wcaG
NIAGMN_26460: NIAGMN_26460 - Murein peptide amidase A, at 5,148,099 to 5,148,827
_26460
NIAGMN_26465: ycjG - L-Ala-D/L-Glu epimerase, at 5,148,802 to 5,149,767
ycjG
Position (kb) 5147
5148 Strain fitness (log2 ratio) -1
0
1 at 5146.192 kb on - strand at 5146.228 kb on - strand at 5146.248 kb on + strand at 5146.613 kb on - strand, within NIAGMN_26450 at 5146.677 kb on - strand, within NIAGMN_26450 at 5146.835 kb on - strand, within NIAGMN_26450 at 5146.960 kb on - strand, within NIAGMN_26450 at 5147.840 kb on - strand at 5148.020 kb on + strand at 5148.157 kb on - strand at 5148.472 kb on + strand, within NIAGMN_26460 at 5148.611 kb on - strand, within NIAGMN_26460
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 5,146,192 - -1.1 5,146,228 - -1.2 5,146,248 + -0.6 5,146,613 - NIAGMN_26450 0.14 -1.1 5,146,677 - NIAGMN_26450 0.24 -0.1 5,146,835 - NIAGMN_26450 0.50 -0.7 5,146,960 - NIAGMN_26450 0.70 +1.5 5,147,840 - -0.7 5,148,020 + +0.2 5,148,157 - +0.5 5,148,472 + NIAGMN_26460 0.51 -0.1 5,148,611 - NIAGMN_26460 0.70 +1.5
Or see this region's nucleotide sequence