Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26375

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntabgR and abgA are separated by 175 nucleotidesabgA and abgB overlap by 1 nucleotides NIAGMN_26370: abgR - LysR family transcriptional regulator, at 5,131,390 to 5,132,298 abgR NIAGMN_26375: abgA - p-aminobenzoyl-glutamate hydrolase subunit AbgA, at 5,132,474 to 5,133,784 abgA NIAGMN_26380: abgB - p-aminobenzoyl-glutamate hydrolase subunit AbgB, at 5,133,784 to 5,135,229 abgB Position (kb) 5132 5133 5134Strain fitness (log2 ratio) -2 -1 0 1at 5131.689 kb on - strand, within abgRat 5131.844 kb on + strand, within abgRat 5131.848 kb on + strand, within abgRat 5131.848 kb on + strand, within abgRat 5131.961 kb on - strand, within abgRat 5131.986 kb on + strand, within abgRat 5132.345 kb on + strandat 5132.351 kb on - strandat 5132.966 kb on - strand, within abgAat 5132.986 kb on - strand, within abgAat 5133.067 kb on - strand, within abgAat 5133.086 kb on - strand, within abgAat 5133.313 kb on + strand, within abgAat 5133.449 kb on + strand, within abgAat 5133.450 kb on - strand, within abgAat 5134.027 kb on + strand, within abgBat 5134.425 kb on - strand, within abgBat 5134.552 kb on + strand, within abgBat 5134.701 kb on - strand, within abgBat 5134.715 kb on - strand, within abgBat 5134.715 kb on - strand, within abgB

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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5,131,689 - abgR NIAGMN_26370 0.33 +0.6
5,131,844 + abgR NIAGMN_26370 0.50 -2.4
5,131,848 + abgR NIAGMN_26370 0.50 +0.0
5,131,848 + abgR NIAGMN_26370 0.50 +0.5
5,131,961 - abgR NIAGMN_26370 0.63 -1.0
5,131,986 + abgR NIAGMN_26370 0.66 +1.5
5,132,345 + -0.4
5,132,351 - +0.5
5,132,966 - abgA NIAGMN_26375 0.38 -0.1
5,132,986 - abgA NIAGMN_26375 0.39 -2.0
5,133,067 - abgA NIAGMN_26375 0.45 +0.0
5,133,086 - abgA NIAGMN_26375 0.47 -0.8
5,133,313 + abgA NIAGMN_26375 0.64 +0.9
5,133,449 + abgA NIAGMN_26375 0.74 -0.6
5,133,450 - abgA NIAGMN_26375 0.74 -1.9
5,134,027 + abgB NIAGMN_26380 0.17 +1.5
5,134,425 - abgB NIAGMN_26380 0.44 +1.2
5,134,552 + abgB NIAGMN_26380 0.53 -0.1
5,134,701 - abgB NIAGMN_26380 0.63 -0.3
5,134,715 - abgB NIAGMN_26380 0.64 +0.5
5,134,715 - abgB NIAGMN_26380 0.64 +0.8

Or see this region's nucleotide sequence