Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zntB and ynaN are separated by 13 nucleotides ynaN and dgcM are separated by 193 nucleotides dgcM and smrA are separated by 20 nucleotides smrA and abgR are separated by 329 nucleotides
NIAGMN_26345: zntB - zinc transporter ZntB, at 5,128,006 to 5,128,989
zntB
NIAGMN_26350: ynaN - Protein YnaN, at 5,129,003 to 5,129,050
ynaN
NIAGMN_26355: dgcM - diguanylate cyclase DgcM, at 5,129,244 to 5,130,476
dgcM
NIAGMN_26360: smrA - DNA endonuclease SmrA, at 5,130,497 to 5,131,060
smrA
NIAGMN_26370: abgR - LysR family transcriptional regulator, at 5,131,390 to 5,132,298
abgR
Position (kb) 5129
5130
5131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5128.257 kb on + strand, within zntB at 5128.409 kb on - strand, within zntB at 5128.664 kb on - strand, within zntB at 5128.851 kb on - strand, within zntB at 5129.129 kb on - strand at 5129.184 kb on - strand at 5129.500 kb on + strand, within dgcM at 5129.654 kb on + strand, within dgcM at 5129.783 kb on + strand, within dgcM at 5129.945 kb on + strand, within dgcM at 5129.945 kb on + strand, within dgcM at 5129.945 kb on + strand, within dgcM at 5130.344 kb on - strand, within dgcM at 5130.605 kb on - strand, within smrA at 5130.695 kb on - strand, within smrA at 5131.122 kb on + strand at 5131.123 kb on - strand at 5131.181 kb on + strand at 5131.260 kb on + strand at 5131.267 kb on + strand at 5131.346 kb on + strand at 5131.433 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 5,128,257 + zntB NIAGMN_26345 0.26 +1.9 5,128,409 - zntB NIAGMN_26345 0.41 -0.5 5,128,664 - zntB NIAGMN_26345 0.67 -1.9 5,128,851 - zntB NIAGMN_26345 0.86 +0.6 5,129,129 - +2.5 5,129,184 - +0.1 5,129,500 + dgcM NIAGMN_26355 0.21 -0.5 5,129,654 + dgcM NIAGMN_26355 0.33 -0.1 5,129,783 + dgcM NIAGMN_26355 0.44 +1.5 5,129,945 + dgcM NIAGMN_26355 0.57 -0.6 5,129,945 + dgcM NIAGMN_26355 0.57 +0.7 5,129,945 + dgcM NIAGMN_26355 0.57 -1.2 5,130,344 - dgcM NIAGMN_26355 0.89 +1.5 5,130,605 - smrA NIAGMN_26360 0.19 +0.7 5,130,695 - smrA NIAGMN_26360 0.35 -1.5 5,131,122 + -0.2 5,131,123 - -0.1 5,131,181 + -1.1 5,131,260 + +0.1 5,131,267 + -0.5 5,131,346 + -1.7 5,131,433 - -0.0
Or see this region's nucleotide sequence