Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26325

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimB and ttcA are separated by 51 nucleotidesttcA and dbpA are separated by 128 nucleotides NIAGMN_26320: fimB - site-specific integrase, at 5,123,804 to 5,125,039 fimB NIAGMN_26325: ttcA - tRNA 2-thiocytidine(32) synthetase TtcA, at 5,125,091 to 5,126,026 ttcA NIAGMN_26330: dbpA - ATP-dependent RNA helicase DbpA, at 5,126,155 to 5,127,528 dbpA Position (kb) 5125 5126 5127Strain fitness (log2 ratio) -1 0 1 2at 5124.293 kb on + strand, within fimBat 5124.583 kb on + strand, within fimBat 5124.583 kb on + strand, within fimBat 5124.630 kb on + strand, within fimBat 5124.707 kb on + strand, within fimBat 5124.707 kb on + strand, within fimBat 5124.880 kb on + strand, within fimBat 5124.925 kb on + strandat 5124.925 kb on + strandat 5125.011 kb on + strandat 5125.192 kb on + strand, within ttcAat 5125.249 kb on + strand, within ttcAat 5125.250 kb on - strand, within ttcAat 5125.491 kb on - strand, within ttcAat 5125.569 kb on + strand, within ttcAat 5125.600 kb on + strand, within ttcAat 5125.675 kb on + strand, within ttcAat 5126.326 kb on + strand, within dbpAat 5126.330 kb on - strand, within dbpAat 5126.551 kb on + strand, within dbpAat 5126.551 kb on + strand, within dbpAat 5126.607 kb on + strand, within dbpAat 5126.782 kb on - strand, within dbpAat 5126.822 kb on - strand, within dbpA

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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5,124,293 + fimB NIAGMN_26320 0.40 -0.8
5,124,583 + fimB NIAGMN_26320 0.63 +2.1
5,124,583 + fimB NIAGMN_26320 0.63 +1.5
5,124,630 + fimB NIAGMN_26320 0.67 +0.5
5,124,707 + fimB NIAGMN_26320 0.73 -1.3
5,124,707 + fimB NIAGMN_26320 0.73 -0.5
5,124,880 + fimB NIAGMN_26320 0.87 -0.9
5,124,925 + +0.8
5,124,925 + -0.9
5,125,011 + +1.9
5,125,192 + ttcA NIAGMN_26325 0.11 +1.9
5,125,249 + ttcA NIAGMN_26325 0.17 -0.8
5,125,250 - ttcA NIAGMN_26325 0.17 +1.5
5,125,491 - ttcA NIAGMN_26325 0.43 +0.5
5,125,569 + ttcA NIAGMN_26325 0.51 +0.2
5,125,600 + ttcA NIAGMN_26325 0.54 -0.2
5,125,675 + ttcA NIAGMN_26325 0.62 -1.7
5,126,326 + dbpA NIAGMN_26330 0.12 +1.8
5,126,330 - dbpA NIAGMN_26330 0.13 +1.9
5,126,551 + dbpA NIAGMN_26330 0.29 -0.4
5,126,551 + dbpA NIAGMN_26330 0.29 -0.4
5,126,607 + dbpA NIAGMN_26330 0.33 -0.3
5,126,782 - dbpA NIAGMN_26330 0.46 -1.3
5,126,822 - dbpA NIAGMN_26330 0.49 +0.9

Or see this region's nucleotide sequence