Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25905

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdxI and NIAGMN_25905 are separated by 219 nucleotidesNIAGMN_25905 and NIAGMN_25910 are separated by 219 nucleotides NIAGMN_25900: pdxI - pyridoxine 4-dehydrogenase, at 5,054,988 to 5,055,848 pdxI NIAGMN_25905: NIAGMN_25905 - BigB-like protein, at 5,056,068 to 5,058,527 _25905 NIAGMN_25910: NIAGMN_25910 - surface-exposed virulence protein BigA, at 5,058,747 to 5,061,782 _25910 Position (kb) 5056 5057 5058 5059Strain fitness (log2 ratio) -1 0 1at 5055.951 kb on + strandat 5055.952 kb on - strandat 5056.646 kb on + strand, within NIAGMN_25905at 5057.034 kb on - strand, within NIAGMN_25905at 5057.036 kb on - strand, within NIAGMN_25905at 5057.360 kb on + strand, within NIAGMN_25905at 5057.846 kb on - strand, within NIAGMN_25905at 5058.071 kb on + strand, within NIAGMN_25905at 5058.076 kb on - strand, within NIAGMN_25905at 5058.347 kb on + strandat 5058.543 kb on - strandat 5058.657 kb on + strandat 5058.714 kb on - strandat 5058.715 kb on + strandat 5059.072 kb on + strand, within NIAGMN_25910at 5059.134 kb on - strand, within NIAGMN_25910at 5059.250 kb on - strand, within NIAGMN_25910

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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5,055,951 + -0.2
5,055,952 - -0.1
5,056,646 + NIAGMN_25905 0.23 -0.6
5,057,034 - NIAGMN_25905 0.39 -0.1
5,057,036 - NIAGMN_25905 0.39 -0.1
5,057,360 + NIAGMN_25905 0.53 +1.5
5,057,846 - NIAGMN_25905 0.72 +0.5
5,058,071 + NIAGMN_25905 0.81 -0.2
5,058,076 - NIAGMN_25905 0.82 +0.2
5,058,347 + -0.6
5,058,543 - +0.6
5,058,657 + +0.5
5,058,714 - +1.5
5,058,715 + +1.2
5,059,072 + NIAGMN_25910 0.11 -0.5
5,059,134 - NIAGMN_25910 0.13 -0.4
5,059,250 - NIAGMN_25910 0.17 +0.2

Or see this region's nucleotide sequence