Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25525

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddG and ompC2 are separated by 258 nucleotidesompC2 and NIAGMN_25530 are separated by 168 nucleotidesNIAGMN_25530 and NIAGMN_25535 are separated by 122 nucleotides NIAGMN_25520: yddG - aromatic amino acid efflux DMT transporter YddG, at 4,977,367 to 4,978,191 yddG NIAGMN_25525: ompC2 - Outer membrane porin C 2, at 4,978,450 to 4,979,550 ompC2 NIAGMN_25530: NIAGMN_25530 - IpaH-like protein, at 4,979,719 to 4,980,222 _25530 NIAGMN_25535: NIAGMN_25535 - leucine Rich Repeat family protein, at 4,980,345 to 4,980,977 _25535 Position (kb) 4978 4979 4980Strain fitness (log2 ratio) -1 0 1at 4977.557 kb on + strand, within yddGat 4977.943 kb on - strand, within yddGat 4978.798 kb on + strand, within ompC2at 4978.893 kb on + strand, within ompC2at 4978.904 kb on + strand, within ompC2at 4979.178 kb on + strand, within ompC2at 4979.503 kb on - strandat 4979.594 kb on - strandat 4979.620 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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4,977,557 + yddG NIAGMN_25520 0.23 +0.1
4,977,943 - yddG NIAGMN_25520 0.70 -0.1
4,978,798 + ompC2 NIAGMN_25525 0.32 +0.5
4,978,893 + ompC2 NIAGMN_25525 0.40 +1.0
4,978,904 + ompC2 NIAGMN_25525 0.41 -1.6
4,979,178 + ompC2 NIAGMN_25525 0.66 +0.9
4,979,503 - +0.5
4,979,594 - +0.8
4,979,620 - -1.3

Or see this region's nucleotide sequence