Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25445

Experiment: TP9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdosP and ddpX are separated by 257 nucleotidesddpX and ddpA are separated by 13 nucleotides NIAGMN_25440: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 4,960,174 to 4,961,325 dosP NIAGMN_25445: ddpX - D-alanyl-D-alanine dipeptidase, at 4,961,583 to 4,962,164 ddpX NIAGMN_25450: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 4,962,178 to 4,963,728 ddpA Position (kb) 4961 4962 4963Strain fitness (log2 ratio) -1 0 1at 4960.899 kb on + strand, within dosPat 4961.493 kb on + strandat 4961.664 kb on - strand, within ddpXat 4962.616 kb on - strand, within ddpAat 4962.991 kb on + strand, within ddpAat 4963.044 kb on + strand, within ddpA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP9
remove
4,960,899 + dosP NIAGMN_25440 0.63 +0.1
4,961,493 + -0.8
4,961,664 - ddpX NIAGMN_25445 0.14 +0.0
4,962,616 - ddpA NIAGMN_25450 0.28 +1.1
4,962,991 + ddpA NIAGMN_25450 0.52 +1.3
4,963,044 + ddpA NIAGMN_25450 0.56 -0.5

Or see this region's nucleotide sequence