Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25355

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfimC and fimA are separated by 41 nucleotidesfimA and ydeS are separated by 13 nucleotidesydeS and ydeR are separated by 12 nucleotides NIAGMN_25350: fimC - fimbrial chaperone protein FimC, at 4,932,399 to 4,933,109 fimC NIAGMN_25355: fimA - type 1 fimbrial major subunit FimA, at 4,933,151 to 4,935,802 fimA NIAGMN_25360: ydeS - Uncharacterized fimbrial-like protein YdeS, at 4,935,816 to 4,936,346 ydeS NIAGMN_25365: ydeR - Uncharacterized fimbrial-like protein YdeR, at 4,936,359 to 4,936,862 ydeR Position (kb) 4933 4934 4935 4936Strain fitness (log2 ratio) -2 -1 0 1at 4932.454 kb on + strandat 4933.124 kb on + strandat 4933.149 kb on + strandat 4933.716 kb on + strand, within fimAat 4933.960 kb on + strand, within fimAat 4934.208 kb on + strand, within fimAat 4934.238 kb on + strand, within fimAat 4934.238 kb on + strand, within fimAat 4935.032 kb on - strand, within fimAat 4935.202 kb on + strand, within fimA

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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4,932,454 + -0.8
4,933,124 + -0.8
4,933,149 + -1.1
4,933,716 + fimA NIAGMN_25355 0.21 +0.9
4,933,960 + fimA NIAGMN_25355 0.31 -0.2
4,934,208 + fimA NIAGMN_25355 0.40 -0.8
4,934,238 + fimA NIAGMN_25355 0.41 -0.2
4,934,238 + fimA NIAGMN_25355 0.41 -0.7
4,935,032 - fimA NIAGMN_25355 0.71 -0.3
4,935,202 + fimA NIAGMN_25355 0.77 -2.1

Or see this region's nucleotide sequence