Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydfI and ydfZ are separated by 35 nucleotides ydfZ and ydfH are separated by 176 nucleotides ydfH and ydfG are separated by 88 nucleotides ydfG and dcp are separated by 136 nucleotides
NIAGMN_25145: ydfI - Uncharacterized oxidoreductase YdfI, at 4,889,092 to 4,890,552
ydfI
NIAGMN_25150: ydfZ - Putative selenoprotein YdfZ, at 4,890,588 to 4,890,791
ydfZ
NIAGMN_25155: ydfH - DNA-binding transcriptional regulator YdfH, at 4,890,968 to 4,891,654
ydfH
NIAGMN_25160: ydfG - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 4,891,743 to 4,892,489
ydfG
NIAGMN_25165: dcp - peptidyl-dipeptidase Dcp, at 4,892,626 to 4,894,671
dcp
Position (kb) 4890
4891
4892 Strain fitness (log2 ratio) -1
0
1 at 4890.494 kb on - strand at 4890.494 kb on - strand at 4890.651 kb on + strand, within ydfZ at 4890.832 kb on - strand at 4891.113 kb on - strand, within ydfH at 4891.150 kb on + strand, within ydfH at 4891.435 kb on - strand, within ydfH at 4892.118 kb on - strand, within ydfG at 4892.344 kb on + strand, within ydfG at 4892.637 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 4,890,494 - +1.6 4,890,494 - +0.0 4,890,651 + ydfZ NIAGMN_25150 0.31 -0.7 4,890,832 - +0.0 4,891,113 - ydfH NIAGMN_25155 0.21 -0.9 4,891,150 + ydfH NIAGMN_25155 0.26 +0.2 4,891,435 - ydfH NIAGMN_25155 0.68 +0.0 4,892,118 - ydfG NIAGMN_25160 0.50 -0.3 4,892,344 + ydfG NIAGMN_25160 0.80 +1.1 4,892,637 + -0.7
Or see this region's nucleotide sequence